miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 5' -55.2 NC_003521.1 + 147840 0.73 0.680455
Target:  5'- gUGCcguGCAGcCGgGGGUGCAGGCGCgAg -3'
miRNA:   3'- -ACGu--CGUCaGCgUCCAUGUCUGUGgU- -5'
13973 5' -55.2 NC_003521.1 + 123606 0.73 0.700428
Target:  5'- cGCGGCcGUCaGCGGGUGC-GACAUCu -3'
miRNA:   3'- aCGUCGuCAG-CGUCCAUGuCUGUGGu -5'
13973 5' -55.2 NC_003521.1 + 190994 0.72 0.710334
Target:  5'- gGCAGCAGgCGCAGGUGgacgUGGGCAgCCu -3'
miRNA:   3'- aCGUCGUCaGCGUCCAU----GUCUGU-GGu -5'
13973 5' -55.2 NC_003521.1 + 15346 0.72 0.719194
Target:  5'- gUGCAGCAGUCGCGacuGGUGacguacuCGGAC-CCu -3'
miRNA:   3'- -ACGUCGUCAGCGU---CCAU-------GUCUGuGGu -5'
13973 5' -55.2 NC_003521.1 + 44078 0.72 0.720175
Target:  5'- gGCAGCAGac---GGUGCAGGCGCCGc -3'
miRNA:   3'- aCGUCGUCagcguCCAUGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 76415 0.72 0.729943
Target:  5'- aGCGGCGGUgUGguGGUGCuGGCgACCGu -3'
miRNA:   3'- aCGUCGUCA-GCguCCAUGuCUG-UGGU- -5'
13973 5' -55.2 NC_003521.1 + 70018 0.72 0.739628
Target:  5'- cGCAGCGGUaC-CAGGUaacGCGGACACg- -3'
miRNA:   3'- aCGUCGUCA-GcGUCCA---UGUCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 53399 0.72 0.739628
Target:  5'- cUGCAGCuccUUGCGGGcguCGGGCGCCAc -3'
miRNA:   3'- -ACGUCGuc-AGCGUCCau-GUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 88514 0.72 0.749221
Target:  5'- cGCAGCGacUCGCAGccGUGCAGGCGCa- -3'
miRNA:   3'- aCGUCGUc-AGCGUC--CAUGUCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 117780 0.72 0.749221
Target:  5'- aGCAGCA--UGguGGcgGCGGACACCGu -3'
miRNA:   3'- aCGUCGUcaGCguCCa-UGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 171220 0.72 0.749221
Target:  5'- cUGCGGCAGUCaGCGGGUggucaaGCAG-CGCg- -3'
miRNA:   3'- -ACGUCGUCAG-CGUCCA------UGUCuGUGgu -5'
13973 5' -55.2 NC_003521.1 + 7759 0.71 0.758714
Target:  5'- gGCGGCAGUCcCA---GCAGACGCCGc -3'
miRNA:   3'- aCGUCGUCAGcGUccaUGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 95637 0.71 0.768097
Target:  5'- aGCAGcCGGUCacgGCGGGUuCAGGCACgAa -3'
miRNA:   3'- aCGUC-GUCAG---CGUCCAuGUCUGUGgU- -5'
13973 5' -55.2 NC_003521.1 + 59653 0.71 0.777362
Target:  5'- gUGCGGCAGaCGCuggcgcgccuggAGGagcuCAGACGCCAg -3'
miRNA:   3'- -ACGUCGUCaGCG------------UCCau--GUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 149483 0.71 0.777362
Target:  5'- cGCGGCu-UCGCcGG-ACAGACGCCGc -3'
miRNA:   3'- aCGUCGucAGCGuCCaUGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 39213 0.71 0.777362
Target:  5'- cGCAGCAG-CGCGGGcucggggacaGCGGugGCCc -3'
miRNA:   3'- aCGUCGUCaGCGUCCa---------UGUCugUGGu -5'
13973 5' -55.2 NC_003521.1 + 239441 0.71 0.777362
Target:  5'- cGCAGCAG-CGCGGGcucggggacaGCGGugGCCc -3'
miRNA:   3'- aCGUCGUCaGCGUCCa---------UGUCugUGGu -5'
13973 5' -55.2 NC_003521.1 + 111874 0.71 0.795501
Target:  5'- gUGguGCAGaCGCuGGUGgAGaACGCCAc -3'
miRNA:   3'- -ACguCGUCaGCGuCCAUgUC-UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 168744 0.71 0.804358
Target:  5'- cGCcgacGCGGUUGCGGGU-CGGACGCg- -3'
miRNA:   3'- aCGu---CGUCAGCGUCCAuGUCUGUGgu -5'
13973 5' -55.2 NC_003521.1 + 180368 0.71 0.804358
Target:  5'- gUGCuGCucguGUUGguGGUACuGGGCGCCGg -3'
miRNA:   3'- -ACGuCGu---CAGCguCCAUG-UCUGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.