miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13973 5' -55.2 NC_003521.1 + 240462 0.73 0.650225
Target:  5'- gGCAGCGGUCGCAGGcgccgccuccgGCAGcucACGCUu -3'
miRNA:   3'- aCGUCGUCAGCGUCCa----------UGUC---UGUGGu -5'
13973 5' -55.2 NC_003521.1 + 239758 0.68 0.909114
Target:  5'- cGCGGCgAGagcuggCGCAGGU-CGGugGCCc -3'
miRNA:   3'- aCGUCG-UCa-----GCGUCCAuGUCugUGGu -5'
13973 5' -55.2 NC_003521.1 + 239441 0.71 0.777362
Target:  5'- cGCAGCAG-CGCGGGcucggggacaGCGGugGCCc -3'
miRNA:   3'- aCGUCGUCaGCGUCCa---------UGUCugUGGu -5'
13973 5' -55.2 NC_003521.1 + 238798 0.67 0.940906
Target:  5'- aGCAGCggacgAGUUGUGGG-GCGcGACGCCGu -3'
miRNA:   3'- aCGUCG-----UCAGCGUCCaUGU-CUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 234133 0.74 0.609756
Target:  5'- aGCAGCGcUCGCGGGcGCAGGC-CCu -3'
miRNA:   3'- aCGUCGUcAGCGUCCaUGUCUGuGGu -5'
13973 5' -55.2 NC_003521.1 + 232354 0.74 0.599661
Target:  5'- aGCAGCAGUCGCGGc----GGCACCGc -3'
miRNA:   3'- aCGUCGUCAGCGUCcauguCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 228972 0.67 0.931243
Target:  5'- aGCGuGCGGugaucUCGCAGGUcCcGAUACCAg -3'
miRNA:   3'- aCGU-CGUC-----AGCGUCCAuGuCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 228706 0.66 0.961064
Target:  5'- gUGCAGCcgcaGGUCGCAGaucauGUuguCGGGCugCGu -3'
miRNA:   3'- -ACGUCG----UCAGCGUC-----CAu--GUCUGugGU- -5'
13973 5' -55.2 NC_003521.1 + 226494 0.68 0.909114
Target:  5'- cGCGGguGUCGUAGGcgUAGAUGCgCGa -3'
miRNA:   3'- aCGUCguCAGCGUCCauGUCUGUG-GU- -5'
13973 5' -55.2 NC_003521.1 + 225652 0.69 0.861655
Target:  5'- cUGCGaauuGguGUCGUAgcGGUGCAG-CACCAa -3'
miRNA:   3'- -ACGU----CguCAGCGU--CCAUGUCuGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 224010 0.7 0.834924
Target:  5'- cUGCGGCAG-CgGCGGGcccggcggucgggGCGGGCGCCGu -3'
miRNA:   3'- -ACGUCGUCaG-CGUCCa------------UGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 223969 0.74 0.619867
Target:  5'- aUGUAGCGGUCGUu-GU-CAGGCACCAc -3'
miRNA:   3'- -ACGUCGUCAGCGucCAuGUCUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 222684 0.66 0.960715
Target:  5'- aGCAGCGGcUCGaccucggugcggcCGGGcgUGCGGAuCACCAg -3'
miRNA:   3'- aCGUCGUC-AGC-------------GUCC--AUGUCU-GUGGU- -5'
13973 5' -55.2 NC_003521.1 + 220979 0.68 0.913838
Target:  5'- cUGCAGCuccacGUCGCGGGcgaacguguaGGugGCCAg -3'
miRNA:   3'- -ACGUCGu----CAGCGUCCaug-------UCugUGGU- -5'
13973 5' -55.2 NC_003521.1 + 220507 0.67 0.949645
Target:  5'- aGCAGCAG-CGUGguggccuccuGGUGCugcauGGCGCCGg -3'
miRNA:   3'- aCGUCGUCaGCGU----------CCAUGu----CUGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 219224 0.67 0.926061
Target:  5'- gGCAGCagAGUUGCAGGacccagguCAGcaGCGCCGg -3'
miRNA:   3'- aCGUCG--UCAGCGUCCau------GUC--UGUGGU- -5'
13973 5' -55.2 NC_003521.1 + 218166 0.66 0.953673
Target:  5'- aGCAGCAGguaGUAGGUgACGacGAC-CCAg -3'
miRNA:   3'- aCGUCGUCag-CGUCCA-UGU--CUGuGGU- -5'
13973 5' -55.2 NC_003521.1 + 218040 0.66 0.961064
Target:  5'- gGCGGCGGcgucCGCAGGUAgAuGAggucCACCGu -3'
miRNA:   3'- aCGUCGUCa---GCGUCCAUgU-CU----GUGGU- -5'
13973 5' -55.2 NC_003521.1 + 216675 0.7 0.829983
Target:  5'- cGCGGUGGUCGCGGcGacguUAUAGGCACgAa -3'
miRNA:   3'- aCGUCGUCAGCGUC-C----AUGUCUGUGgU- -5'
13973 5' -55.2 NC_003521.1 + 216616 0.74 0.609756
Target:  5'- aGCAGCAGUCgacgguagGCGGGcGCGccGACGCCGg -3'
miRNA:   3'- aCGUCGUCAG--------CGUCCaUGU--CUGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.