miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13974 5' -62 NC_003521.1 + 208086 1.08 0.001729
Target:  5'- aGGUUCCUCCGCGCCCGCUGGUGGCGUc -3'
miRNA:   3'- -CCAAGGAGGCGCGGGCGACCACCGCA- -5'
13974 5' -62 NC_003521.1 + 112022 0.73 0.376696
Target:  5'- aGUUCCUCaCGCGCCUGgUGGaGGCc- -3'
miRNA:   3'- cCAAGGAG-GCGCGGGCgACCaCCGca -5'
13974 5' -62 NC_003521.1 + 11590 0.73 0.392138
Target:  5'- ---aCCUCCGCgGCCCGCgGGUccacuGGCGg -3'
miRNA:   3'- ccaaGGAGGCG-CGGGCGaCCA-----CCGCa -5'
13974 5' -62 NC_003521.1 + 42547 0.72 0.440849
Target:  5'- cGG-UCCUCCGCgacGCCCgGCUGGcuguccGGCGg -3'
miRNA:   3'- -CCaAGGAGGCG---CGGG-CGACCa-----CCGCa -5'
13974 5' -62 NC_003521.1 + 32895 0.71 0.45441
Target:  5'- cGGUgcugCCgCCGUGCCCGCcgcccccggcguaGGUGGCGc -3'
miRNA:   3'- -CCAa---GGaGGCGCGGGCGa------------CCACCGCa -5'
13974 5' -62 NC_003521.1 + 103395 0.71 0.483952
Target:  5'- cGGg--CUCC-UGCgCGCUGGUGGCGUa -3'
miRNA:   3'- -CCaagGAGGcGCGgGCGACCACCGCA- -5'
13974 5' -62 NC_003521.1 + 89919 0.71 0.483952
Target:  5'- aGGUUCgaUCCccagGCGCCauCUGGUGGCGg -3'
miRNA:   3'- -CCAAGg-AGG----CGCGGgcGACCACCGCa -5'
13974 5' -62 NC_003521.1 + 172636 0.71 0.499065
Target:  5'- cGG-UCCUCaCGCGCCCccguuggucugcgcGCUGGgGGUGg -3'
miRNA:   3'- -CCaAGGAG-GCGCGGG--------------CGACCaCCGCa -5'
13974 5' -62 NC_003521.1 + 187478 0.7 0.547422
Target:  5'- --cUCCgccgCCGCGCCgGCgUGGUGGUc- -3'
miRNA:   3'- ccaAGGa---GGCGCGGgCG-ACCACCGca -5'
13974 5' -62 NC_003521.1 + 197855 0.7 0.556722
Target:  5'- cGGUgggcgCCggcgggUCGCGCUCGCUGGgcugcaGGCGg -3'
miRNA:   3'- -CCAa----GGa-----GGCGCGGGCGACCa-----CCGCa -5'
13974 5' -62 NC_003521.1 + 152607 0.7 0.566067
Target:  5'- --cUCCUCgGCGCCCugGUUGGUcaccaGGCGg -3'
miRNA:   3'- ccaAGGAGgCGCGGG--CGACCA-----CCGCa -5'
13974 5' -62 NC_003521.1 + 198748 0.69 0.575452
Target:  5'- aGG-UCUUgCCGUGCUCGCUGGUcGCGc -3'
miRNA:   3'- -CCaAGGA-GGCGCGGGCGACCAcCGCa -5'
13974 5' -62 NC_003521.1 + 39817 0.69 0.583929
Target:  5'- cGGgcggUCCUCCgccgaugGCGCCUGCUuGGccuccGGCGUg -3'
miRNA:   3'- -CCa---AGGAGG-------CGCGGGCGA-CCa----CCGCA- -5'
13974 5' -62 NC_003521.1 + 240044 0.69 0.583929
Target:  5'- cGGgcggUCCUCCgccgaugGCGCCUGCUuGGccuccGGCGUg -3'
miRNA:   3'- -CCa---AGGAGG-------CGCGGGCGA-CCa----CCGCA- -5'
13974 5' -62 NC_003521.1 + 201532 0.69 0.594322
Target:  5'- uGGUUCCgcuaCgGCGCCgGCgacGUGGCGc -3'
miRNA:   3'- -CCAAGGa---GgCGCGGgCGac-CACCGCa -5'
13974 5' -62 NC_003521.1 + 1304 0.69 0.594322
Target:  5'- uGGUUCCgcuaCgGCGCCgGCgacGUGGCGc -3'
miRNA:   3'- -CCAAGGa---GgCGCGGgCGac-CACCGCa -5'
13974 5' -62 NC_003521.1 + 44041 0.69 0.613286
Target:  5'- cGGUcCCguuuaCCGCGCCCGC-GGUcGCGc -3'
miRNA:   3'- -CCAaGGa----GGCGCGGGCGaCCAcCGCa -5'
13974 5' -62 NC_003521.1 + 195492 0.69 0.617086
Target:  5'- cGGUaUCCucgugaucaucaucaUCgGCGUgUCGCUGGUGGCGUu -3'
miRNA:   3'- -CCA-AGG---------------AGgCGCG-GGCGACCACCGCA- -5'
13974 5' -62 NC_003521.1 + 85450 0.68 0.632299
Target:  5'- --gUCgUCCGCGCCgGCgagaaaGGUGGuCGUc -3'
miRNA:   3'- ccaAGgAGGCGCGGgCGa-----CCACC-GCA- -5'
13974 5' -62 NC_003521.1 + 44222 0.68 0.651312
Target:  5'- -aUUCCgUCUGCGuacCCCGCUGuUGGCGa -3'
miRNA:   3'- ccAAGG-AGGCGC---GGGCGACcACCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.