miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13974 5' -62 NC_003521.1 + 191069 0.66 0.762316
Target:  5'- uGUUCCcgCgGCGaCCG-UGGUGGCGg -3'
miRNA:   3'- cCAAGGa-GgCGCgGGCgACCACCGCa -5'
13974 5' -62 NC_003521.1 + 143980 0.67 0.723528
Target:  5'- ---cCUUCCGC-CCCaugccgcugcagaaGCUGGUGGUGUg -3'
miRNA:   3'- ccaaGGAGGCGcGGG--------------CGACCACCGCA- -5'
13974 5' -62 NC_003521.1 + 232191 0.67 0.726281
Target:  5'- --gUCCUCCcacgccauggGCcCCCGCgGGUGGUGg -3'
miRNA:   3'- ccaAGGAGG----------CGcGGGCGaCCACCGCa -5'
13974 5' -62 NC_003521.1 + 125193 0.67 0.735414
Target:  5'- uGGUggaCUCCaUGgCCGCcaUGGUGGCGg -3'
miRNA:   3'- -CCAag-GAGGcGCgGGCG--ACCACCGCa -5'
13974 5' -62 NC_003521.1 + 222979 0.67 0.735414
Target:  5'- aGGgcaCCUCCuGCGCCCaCUuGGUauGGCGg -3'
miRNA:   3'- -CCaa-GGAGG-CGCGGGcGA-CCA--CCGCa -5'
13974 5' -62 NC_003521.1 + 151301 0.67 0.735414
Target:  5'- gGGUUCCgaCGCGCgCaaggcggccagGCgGGUGGCGUc -3'
miRNA:   3'- -CCAAGGagGCGCGgG-----------CGaCCACCGCA- -5'
13974 5' -62 NC_003521.1 + 143045 0.66 0.744469
Target:  5'- ---cCUUCCGCGaCCUGgaUGGUGGUGg -3'
miRNA:   3'- ccaaGGAGGCGC-GGGCg-ACCACCGCa -5'
13974 5' -62 NC_003521.1 + 115234 0.66 0.753439
Target:  5'- aGUUCCUCCGUGUugugcgCCGCcgUGGUcGGgGg -3'
miRNA:   3'- cCAAGGAGGCGCG------GGCG--ACCA-CCgCa -5'
13974 5' -62 NC_003521.1 + 182279 0.66 0.753439
Target:  5'- aGGUa-CUgCGUGCCCGCggGGaUGGUGUu -3'
miRNA:   3'- -CCAagGAgGCGCGGGCGa-CC-ACCGCA- -5'
13974 5' -62 NC_003521.1 + 209543 0.67 0.689125
Target:  5'- cGGUUa---UGCGCCCgGCggGGUGGCGg -3'
miRNA:   3'- -CCAAggagGCGCGGG-CGa-CCACCGCa -5'
13974 5' -62 NC_003521.1 + 85450 0.68 0.632299
Target:  5'- --gUCgUCCGCGCCgGCgagaaaGGUGGuCGUc -3'
miRNA:   3'- ccaAGgAGGCGCGGgCGa-----CCACC-GCA- -5'
13974 5' -62 NC_003521.1 + 195492 0.69 0.617086
Target:  5'- cGGUaUCCucgugaucaucaucaUCgGCGUgUCGCUGGUGGCGUu -3'
miRNA:   3'- -CCA-AGG---------------AGgCGCG-GGCGACCACCGCA- -5'
13974 5' -62 NC_003521.1 + 42547 0.72 0.440849
Target:  5'- cGG-UCCUCCGCgacGCCCgGCUGGcuguccGGCGg -3'
miRNA:   3'- -CCaAGGAGGCG---CGGG-CGACCa-----CCGCa -5'
13974 5' -62 NC_003521.1 + 32895 0.71 0.45441
Target:  5'- cGGUgcugCCgCCGUGCCCGCcgcccccggcguaGGUGGCGc -3'
miRNA:   3'- -CCAa---GGaGGCGCGGGCGa------------CCACCGCa -5'
13974 5' -62 NC_003521.1 + 89919 0.71 0.483952
Target:  5'- aGGUUCgaUCCccagGCGCCauCUGGUGGCGg -3'
miRNA:   3'- -CCAAGg-AGG----CGCGGgcGACCACCGCa -5'
13974 5' -62 NC_003521.1 + 172636 0.71 0.499065
Target:  5'- cGG-UCCUCaCGCGCCCccguuggucugcgcGCUGGgGGUGg -3'
miRNA:   3'- -CCaAGGAG-GCGCGGG--------------CGACCaCCGCa -5'
13974 5' -62 NC_003521.1 + 187478 0.7 0.547422
Target:  5'- --cUCCgccgCCGCGCCgGCgUGGUGGUc- -3'
miRNA:   3'- ccaAGGa---GGCGCGGgCG-ACCACCGca -5'
13974 5' -62 NC_003521.1 + 152607 0.7 0.566067
Target:  5'- --cUCCUCgGCGCCCugGUUGGUcaccaGGCGg -3'
miRNA:   3'- ccaAGGAGgCGCGGG--CGACCA-----CCGCa -5'
13974 5' -62 NC_003521.1 + 240044 0.69 0.583929
Target:  5'- cGGgcggUCCUCCgccgaugGCGCCUGCUuGGccuccGGCGUg -3'
miRNA:   3'- -CCa---AGGAGG-------CGCGGGCGA-CCa----CCGCA- -5'
13974 5' -62 NC_003521.1 + 201532 0.69 0.594322
Target:  5'- uGGUUCCgcuaCgGCGCCgGCgacGUGGCGc -3'
miRNA:   3'- -CCAAGGa---GgCGCGGgCGac-CACCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.