miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 69860 0.67 0.840116
Target:  5'- -cGCCGAUGAGGCCGcCGcGCagCGcCa -3'
miRNA:   3'- ucCGGCUGCUCCGGUuGC-CGaaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 68504 0.67 0.85531
Target:  5'- cGGCCGAgGccuGcGCCAGCGGCgUCa-- -3'
miRNA:   3'- uCCGGCUgCu--C-CGGUUGCCGaAGcag -5'
13975 3' -58.8 NC_003521.1 + 168532 0.67 0.847802
Target:  5'- cAGGCUGGC--GGCCAgcGCGGCggCGg- -3'
miRNA:   3'- -UCCGGCUGcuCCGGU--UGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 100131 0.67 0.854568
Target:  5'- cGGCUGGCGguccugcgggaAGGCCGugGgGCUcuugaggUCGUUg -3'
miRNA:   3'- uCCGGCUGC-----------UCCGGUugC-CGA-------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 128262 0.67 0.85531
Target:  5'- uAGGCCGugGuGGgCAGCGcGUUgcggauggUGUCg -3'
miRNA:   3'- -UCCGGCugCuCCgGUUGC-CGAa-------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 207058 0.67 0.85531
Target:  5'- cAGGCCGgagGCGuugcaGGGCaggaGACGGCUgaccUGUCg -3'
miRNA:   3'- -UCCGGC---UGC-----UCCGg---UUGCCGAa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 45307 0.67 0.85531
Target:  5'- aGGaGCCGGagccCGAgcuGGCCGACGGCUaCGa- -3'
miRNA:   3'- -UC-CGGCU----GCU---CCGGUUGCCGAaGCag -5'
13975 3' -58.8 NC_003521.1 + 163710 0.67 0.840116
Target:  5'- cGGCC-ACGAGGCCGAaucCUgCGUCg -3'
miRNA:   3'- uCCGGcUGCUCCGGUUgccGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 130289 0.67 0.840116
Target:  5'- cGGCUaccugGGCGAGGCCG-CGGCgccgCG-Ca -3'
miRNA:   3'- uCCGG-----CUGCUCCGGUuGCCGaa--GCaG- -5'
13975 3' -58.8 NC_003521.1 + 88661 0.67 0.840116
Target:  5'- aGGGCCGccagguCGguGGGCCGGCGGCccggcUCGg- -3'
miRNA:   3'- -UCCGGCu-----GC--UCCGGUUGCCGa----AGCag -5'
13975 3' -58.8 NC_003521.1 + 152199 0.67 0.85531
Target:  5'- uGGGCUgugacccgGACGAGGUC-ACGGCgcaCGUg -3'
miRNA:   3'- -UCCGG--------CUGCUCCGGuUGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 123216 0.67 0.85531
Target:  5'- cGGGUagGACGGGGgCGGCGGUaggUgGUCg -3'
miRNA:   3'- -UCCGg-CUGCUCCgGUUGCCGa--AgCAG- -5'
13975 3' -58.8 NC_003521.1 + 104975 0.67 0.847802
Target:  5'- aGGGCUGACGuucccGGuGCuCAugGGCacgggagcgUUCGUCg -3'
miRNA:   3'- -UCCGGCUGC-----UC-CG-GUugCCG---------AAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 219401 0.67 0.862635
Target:  5'- cGGGCaCGACGAGGCCGaguagcugccagAgGGC--CGUa -3'
miRNA:   3'- -UCCG-GCUGCUCCGGU------------UgCCGaaGCAg -5'
13975 3' -58.8 NC_003521.1 + 214986 0.67 0.862635
Target:  5'- cGGCCaGGgGGGugcgaGCCAGCGGCgucUCGUa -3'
miRNA:   3'- uCCGG-CUgCUC-----CGGUUGCCGa--AGCAg -5'
13975 3' -58.8 NC_003521.1 + 13433 0.67 0.847802
Target:  5'- cGGUCGcCGAGGaCGACGGa--CGUCa -3'
miRNA:   3'- uCCGGCuGCUCCgGUUGCCgaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 78802 0.67 0.824234
Target:  5'- cAGGUCGACGAgcGGCCcuggUGGCgccagUCGUa -3'
miRNA:   3'- -UCCGGCUGCU--CCGGuu--GCCGa----AGCAg -5'
13975 3' -58.8 NC_003521.1 + 86197 0.67 0.832258
Target:  5'- cGGGCCacgGugGAGGCgAAgGGCggCGg- -3'
miRNA:   3'- -UCCGG---CugCUCCGgUUgCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 102594 0.67 0.832258
Target:  5'- gGGGCUGGCGcuGGCC-ACGucgUCGUCg -3'
miRNA:   3'- -UCCGGCUGCu-CCGGuUGCcgaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 118921 0.67 0.832258
Target:  5'- cGGCgccgCGGCGuGGgCGGCGGCguccCGUCa -3'
miRNA:   3'- uCCG----GCUGCuCCgGUUGCCGaa--GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.