miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 38240 0.66 0.889999
Target:  5'- cGGCgGGCGGGGCgGagacGCGGCccaggGUCa -3'
miRNA:   3'- uCCGgCUGCUCCGgU----UGCCGaag--CAG- -5'
13975 3' -58.8 NC_003521.1 + 59752 0.66 0.883458
Target:  5'- cGGGCCGGaccuGGUgAGCaGCUUCGUg -3'
miRNA:   3'- -UCCGGCUgcu-CCGgUUGcCGAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 90096 0.66 0.883458
Target:  5'- cGGCCcagGACGuGGCCcACGGCcgagagccaGUCg -3'
miRNA:   3'- uCCGG---CUGCuCCGGuUGCCGaag------CAG- -5'
13975 3' -58.8 NC_003521.1 + 191657 0.66 0.896334
Target:  5'- gGGGUgugugaguugCGAUGAGGUCGccgaggACGGCgaggCGUCu -3'
miRNA:   3'- -UCCG----------GCUGCUCCGGU------UGCCGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 128386 0.66 0.896334
Target:  5'- aGGGCCGcCuGGGCCGccugaGCGGg--CGUCg -3'
miRNA:   3'- -UCCGGCuGcUCCGGU-----UGCCgaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 195409 0.66 0.889999
Target:  5'- gAGGCCgaggagGugGAGGCC-ACGGCcgaCGa- -3'
miRNA:   3'- -UCCGG------CugCUCCGGuUGCCGaa-GCag -5'
13975 3' -58.8 NC_003521.1 + 86658 0.66 0.869771
Target:  5'- cGGCCGACGAcagguugaGGaUCAGCG-CgUCGUCg -3'
miRNA:   3'- uCCGGCUGCU--------CC-GGUUGCcGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 53370 0.66 0.86694
Target:  5'- gGGGCCGACaGAccgagcaggagcaGGCCG-CGGCgagcaggggauggcgCGUCg -3'
miRNA:   3'- -UCCGGCUG-CU-------------CCGGUuGCCGaa-------------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 95217 0.66 0.876714
Target:  5'- cGGGUgCGacugcagcaGCGAGGCC-ACGGCcgccgCGUCg -3'
miRNA:   3'- -UCCG-GC---------UGCUCCGGuUGCCGaa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 188500 0.66 0.894455
Target:  5'- uGGGUccgccgccgagauaCGAgGAGGCCGGCgGGCcccaCGUCg -3'
miRNA:   3'- -UCCG--------------GCUgCUCCGGUUG-CCGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 115839 0.66 0.883458
Target:  5'- aGGcGCUGGCucAGGCgGGCGGCgcacgccUCGUCa -3'
miRNA:   3'- -UC-CGGCUGc-UCCGgUUGCCGa------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 151815 0.66 0.889999
Target:  5'- uGGcGCCGGUGGGGCCcGCGGCauUUCuGUa -3'
miRNA:   3'- -UC-CGGCUGCUCCGGuUGCCG--AAG-CAg -5'
13975 3' -58.8 NC_003521.1 + 122652 0.66 0.889999
Target:  5'- -uGCCGGCGGGcGUCGucuGCGGCggugggguggCGUCg -3'
miRNA:   3'- ucCGGCUGCUC-CGGU---UGCCGaa--------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 50530 0.66 0.876714
Target:  5'- uGGGCCG-CGGGGUUcGCGGCaguaUCG-Ca -3'
miRNA:   3'- -UCCGGCuGCUCCGGuUGCCGa---AGCaG- -5'
13975 3' -58.8 NC_003521.1 + 36988 0.66 0.883458
Target:  5'- cGGCgacauccgCGACGAGGgCGucGCGGCggaGUCa -3'
miRNA:   3'- uCCG--------GCUGCUCCgGU--UGCCGaagCAG- -5'
13975 3' -58.8 NC_003521.1 + 98612 0.66 0.87396
Target:  5'- gAGGCCauGGCGAGGagggcgagagcggCGGCGGCgguagcggCGUCg -3'
miRNA:   3'- -UCCGG--CUGCUCCg------------GUUGCCGaa------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 69263 0.67 0.862635
Target:  5'- uGGCCGACGuGGCaAGCGGUc-UGUUu -3'
miRNA:   3'- uCCGGCUGCuCCGgUUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 219401 0.67 0.862635
Target:  5'- cGGGCaCGACGAGGCCGaguagcugccagAgGGC--CGUa -3'
miRNA:   3'- -UCCG-GCUGCUCCGGU------------UgCCGaaGCAg -5'
13975 3' -58.8 NC_003521.1 + 81192 0.67 0.840116
Target:  5'- cAGGCCucGGCGAucugGGCCAAa-GCUUUGUUg -3'
miRNA:   3'- -UCCGG--CUGCU----CCGGUUgcCGAAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 130289 0.67 0.840116
Target:  5'- cGGCUaccugGGCGAGGCCG-CGGCgccgCG-Ca -3'
miRNA:   3'- uCCGG-----CUGCUCCGGUuGCCGaa--GCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.