miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 75633 0.65 0.901857
Target:  5'- -cGCCGACGAugacgacGGCaaCAGCGGCgcaGUCc -3'
miRNA:   3'- ucCGGCUGCU-------CCG--GUUGCCGaagCAG- -5'
13975 3' -58.8 NC_003521.1 + 213037 0.66 0.883458
Target:  5'- cGGCCGAgCG-GGCCGGaguaGGUUUCuUCc -3'
miRNA:   3'- uCCGGCU-GCuCCGGUUg---CCGAAGcAG- -5'
13975 3' -58.8 NC_003521.1 + 191657 0.66 0.896334
Target:  5'- gGGGUgugugaguugCGAUGAGGUCGccgaggACGGCgaggCGUCu -3'
miRNA:   3'- -UCCG----------GCUGCUCCGGU------UGCCGaa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 53370 0.66 0.86694
Target:  5'- gGGGCCGACaGAccgagcaggagcaGGCCG-CGGCgagcaggggauggcgCGUCg -3'
miRNA:   3'- -UCCGGCUG-CU-------------CCGGUuGCCGaa-------------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 207173 0.66 0.876714
Target:  5'- aGGGCCGucugaauccaGCGGGaugugaGCCGcucgGCGGCaUCGUCc -3'
miRNA:   3'- -UCCGGC----------UGCUC------CGGU----UGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 100225 0.66 0.889999
Target:  5'- uAGGCCGGCGAGGUgGA--GCUgggCGa- -3'
miRNA:   3'- -UCCGGCUGCUCCGgUUgcCGAa--GCag -5'
13975 3' -58.8 NC_003521.1 + 117863 0.66 0.889999
Target:  5'- gAGGaccugaguuuccCCGGCGAGGCCGagcACGGCcgggCG-Cg -3'
miRNA:   3'- -UCC------------GGCUGCUCCGGU---UGCCGaa--GCaG- -5'
13975 3' -58.8 NC_003521.1 + 238468 0.66 0.889999
Target:  5'- cGGCgGGCGGGGCgGagacGCGGCccaggGUCa -3'
miRNA:   3'- uCCGgCUGCUCCGgU----UGCCGaag--CAG- -5'
13975 3' -58.8 NC_003521.1 + 57144 0.66 0.883458
Target:  5'- uAGGUCu-CGucGGCCAcgcGCGGCaggUCGUCg -3'
miRNA:   3'- -UCCGGcuGCu-CCGGU---UGCCGa--AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 196893 0.66 0.889999
Target:  5'- gAGGCCGGgGcGGaaGGCGGg-UCGUCg -3'
miRNA:   3'- -UCCGGCUgCuCCggUUGCCgaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 86267 0.66 0.869771
Target:  5'- cGGCCGGCGAGGCgAAguugggggUGGCgcccaacaCGUa -3'
miRNA:   3'- uCCGGCUGCUCCGgUU--------GCCGaa------GCAg -5'
13975 3' -58.8 NC_003521.1 + 184369 0.66 0.896334
Target:  5'- uGGCgCGGCGccucucggaccuGGGCCAcgagGCGGcCUUCGa- -3'
miRNA:   3'- uCCG-GCUGC------------UCCGGU----UGCC-GAAGCag -5'
13975 3' -58.8 NC_003521.1 + 17127 0.66 0.869771
Target:  5'- gAGGUCGuCGAuccuGCCGGCGcGCUUCGcCc -3'
miRNA:   3'- -UCCGGCuGCUc---CGGUUGC-CGAAGCaG- -5'
13975 3' -58.8 NC_003521.1 + 130001 0.66 0.889999
Target:  5'- -cGCCGGCGGcggcgcgcaacGGCCGcUGGCUUucagCGUCa -3'
miRNA:   3'- ucCGGCUGCU-----------CCGGUuGCCGAA----GCAG- -5'
13975 3' -58.8 NC_003521.1 + 167331 0.66 0.896334
Target:  5'- cGGGUCGAgGAGGagcuCGGCcUCGUa -3'
miRNA:   3'- -UCCGGCUgCUCCgguuGCCGaAGCAg -5'
13975 3' -58.8 NC_003521.1 + 33143 0.66 0.896334
Target:  5'- -cGCCGAUGAcgaaGCCGuUGGCcUCGUCg -3'
miRNA:   3'- ucCGGCUGCUc---CGGUuGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 192106 0.66 0.892558
Target:  5'- -cGCCGGCGucuccaccucucccGGCCucguCGGCUcCGUCg -3'
miRNA:   3'- ucCGGCUGCu-------------CCGGuu--GCCGAaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 53501 0.66 0.896334
Target:  5'- gAGGCCGcugcuGCGGcgucgcagcGGCCGAUGGUgcUGUCc -3'
miRNA:   3'- -UCCGGC-----UGCU---------CCGGUUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 77724 0.66 0.876714
Target:  5'- uGG-CGACGGcGGCCucgGugGGCggCGUCu -3'
miRNA:   3'- uCCgGCUGCU-CCGG---UugCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 115839 0.66 0.883458
Target:  5'- aGGcGCUGGCucAGGCgGGCGGCgcacgccUCGUCa -3'
miRNA:   3'- -UC-CGGCUGc-UCCGgUUGCCGa------AGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.