miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 207671 1.1 0.002355
Target:  5'- gAGGCCGACGAGGCCAACGGCUUCGUCa -3'
miRNA:   3'- -UCCGGCUGCUCCGGUUGCCGAAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 109361 0.83 0.14414
Target:  5'- gAGGCCGACGAGGCCGagagcGCGGcCUUCa-- -3'
miRNA:   3'- -UCCGGCUGCUCCGGU-----UGCC-GAAGcag -5'
13975 3' -58.8 NC_003521.1 + 177784 0.81 0.192626
Target:  5'- aGGGCCGACGGGGCCuguccgcugGugGGCgUCGUg -3'
miRNA:   3'- -UCCGGCUGCUCCGG---------UugCCGaAGCAg -5'
13975 3' -58.8 NC_003521.1 + 153659 0.78 0.285266
Target:  5'- uGGaCGACGAGGCC-AUGaGCUUCGUCu -3'
miRNA:   3'- uCCgGCUGCUCCGGuUGC-CGAAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 124598 0.77 0.333307
Target:  5'- uGGCCGACGAGGacgacgaagcggcggCGACGGCgaCGUCu -3'
miRNA:   3'- uCCGGCUGCUCCg--------------GUUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 104681 0.76 0.34713
Target:  5'- cGGaGCuCGAgGGGGCCGugGGCggCGUCg -3'
miRNA:   3'- -UC-CG-GCUgCUCCGGUugCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 197334 0.75 0.401513
Target:  5'- cAGGCCcugGGCGAGGUCAuCGGCUccuUCGUg -3'
miRNA:   3'- -UCCGG---CUGCUCCGGUuGCCGA---AGCAg -5'
13975 3' -58.8 NC_003521.1 + 36360 0.75 0.418016
Target:  5'- cGGGCUGGCGuGGC--GCGGCUUCG-Cg -3'
miRNA:   3'- -UCCGGCUGCuCCGguUGCCGAAGCaG- -5'
13975 3' -58.8 NC_003521.1 + 172115 0.75 0.418016
Target:  5'- cGGCCGACGGcGCC-ACGGUcaugagUUCGUCg -3'
miRNA:   3'- uCCGGCUGCUcCGGuUGCCG------AAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 234781 0.74 0.443527
Target:  5'- gGGGCCGcUGGGGC--ACGGCUuacUCGUCg -3'
miRNA:   3'- -UCCGGCuGCUCCGguUGCCGA---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 978 0.74 0.452224
Target:  5'- gAGGCCGGCGgucugcucccguGGGCCGgccguACGGCUUCu-- -3'
miRNA:   3'- -UCCGGCUGC------------UCCGGU-----UGCCGAAGcag -5'
13975 3' -58.8 NC_003521.1 + 237169 0.74 0.452224
Target:  5'- cGGCCGcCGAGGCaGACGGCggCGg- -3'
miRNA:   3'- uCCGGCuGCUCCGgUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 240635 0.74 0.458367
Target:  5'- cGGGCCGGcCGgucggacguguuucGGGCCGGCGGg-UCGUCg -3'
miRNA:   3'- -UCCGGCU-GC--------------UCCGGUUGCCgaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 200314 0.74 0.458367
Target:  5'- cGGGCCGGcCGgucggacguguuucGGGCCGGCGGg-UCGUCg -3'
miRNA:   3'- -UCCGGCU-GC--------------UCCGGUUGCCgaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 86 0.74 0.458367
Target:  5'- cGGGCCGGcCGgucggacguguuucGGGCCGGCGGg-UCGUCg -3'
miRNA:   3'- -UCCGGCU-GC--------------UCCGGUUGCCgaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 201205 0.74 0.46013
Target:  5'- gAGGCCGGCGgucugcucccgcuGGGCCGgccguACGGCUUCu-- -3'
miRNA:   3'- -UCCGGCUGC-------------UCCGGU-----UGCCGAAGcag -5'
13975 3' -58.8 NC_003521.1 + 54451 0.74 0.478856
Target:  5'- uGGGCCGACGGGGC-GAUGGUUaUCGa- -3'
miRNA:   3'- -UCCGGCUGCUCCGgUUGCCGA-AGCag -5'
13975 3' -58.8 NC_003521.1 + 142751 0.73 0.487904
Target:  5'- aAGGCgaCGACGGGGUgaccagcguccgCGGCGGCgUCGUCg -3'
miRNA:   3'- -UCCG--GCUGCUCCG------------GUUGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 111243 0.73 0.497032
Target:  5'- cGGCCGGCGcGGCgCGGCGGagcagccaUCGUCg -3'
miRNA:   3'- uCCGGCUGCuCCG-GUUGCCga------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 34991 0.73 0.497032
Target:  5'- aAGGUCucCGGGGCCAGCGaGCgcuugCGUCg -3'
miRNA:   3'- -UCCGGcuGCUCCGGUUGC-CGaa---GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.