miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 39445 0.7 0.67936
Target:  5'- cGGCCGAgccCGGcGCCGAgGGCcgCGUCg -3'
miRNA:   3'- uCCGGCU---GCUcCGGUUgCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 210900 0.72 0.553251
Target:  5'- uGGCCGuCGccAGGCCcuuGACGGCcacgggUCGUCg -3'
miRNA:   3'- uCCGGCuGC--UCCGG---UUGCCGa-----AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 53182 0.72 0.553251
Target:  5'- -cGCCGAUGAagauGGCCAGCGGCgcgCGg- -3'
miRNA:   3'- ucCGGCUGCU----CCGGUUGCCGaa-GCag -5'
13975 3' -58.8 NC_003521.1 + 145875 0.72 0.572434
Target:  5'- cGGGCggcgccgaCGACGAGGCCGcCGGCggCGg- -3'
miRNA:   3'- -UCCG--------GCUGCUCCGGUuGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 218619 0.71 0.60732
Target:  5'- cGGCCGccagcgcGCGGcgguaagcggccacGGCCGGCGGCgccUCGUCc -3'
miRNA:   3'- uCCGGC-------UGCU--------------CCGGUUGCCGa--AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 168422 0.71 0.620961
Target:  5'- aGGGCgGGCGgcaGGGCCGcgGCGGCgggCGUg -3'
miRNA:   3'- -UCCGgCUGC---UCCGGU--UGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 72983 0.71 0.64047
Target:  5'- -aGCCGACGA-GCCcGCGGCggUCGUg -3'
miRNA:   3'- ucCGGCUGCUcCGGuUGCCGa-AGCAg -5'
13975 3' -58.8 NC_003521.1 + 38312 0.7 0.659956
Target:  5'- cAGGCCGAgGcacGGCCAAgGGCgauggCGUUu -3'
miRNA:   3'- -UCCGGCUgCu--CCGGUUgCCGaa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 59094 0.7 0.669671
Target:  5'- cGGCCG-CuuGGCCAGCGuGCgcgCGUCc -3'
miRNA:   3'- uCCGGCuGcuCCGGUUGC-CGaa-GCAG- -5'
13975 3' -58.8 NC_003521.1 + 92007 0.72 0.553251
Target:  5'- cGGGagCGGCGAGGCgCGGCGGCggCGg- -3'
miRNA:   3'- -UCCg-GCUGCUCCG-GUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 72852 0.72 0.54373
Target:  5'- gGGGCggCGACGguAGGCaCGGCGGUcgUCGUCa -3'
miRNA:   3'- -UCCG--GCUGC--UCCG-GUUGCCGa-AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 164677 0.73 0.524856
Target:  5'- uGGUgaaccccgugaCGACGAGGCCGGCGGCUgaCGa- -3'
miRNA:   3'- uCCG-----------GCUGCUCCGGUUGCCGAa-GCag -5'
13975 3' -58.8 NC_003521.1 + 197334 0.75 0.401513
Target:  5'- cAGGCCcugGGCGAGGUCAuCGGCUccuUCGUg -3'
miRNA:   3'- -UCCGG---CUGCUCCGGUuGCCGA---AGCAg -5'
13975 3' -58.8 NC_003521.1 + 234781 0.74 0.443527
Target:  5'- gGGGCCGcUGGGGC--ACGGCUuacUCGUCg -3'
miRNA:   3'- -UCCGGCuGCUCCGguUGCCGA---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 200314 0.74 0.458367
Target:  5'- cGGGCCGGcCGgucggacguguuucGGGCCGGCGGg-UCGUCg -3'
miRNA:   3'- -UCCGGCU-GC--------------UCCGGUUGCCgaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 201205 0.74 0.46013
Target:  5'- gAGGCCGGCGgucugcucccgcuGGGCCGgccguACGGCUUCu-- -3'
miRNA:   3'- -UCCGGCUGC-------------UCCGGU-----UGCCGAAGcag -5'
13975 3' -58.8 NC_003521.1 + 142751 0.73 0.487904
Target:  5'- aAGGCgaCGACGGGGUgaccagcguccgCGGCGGCgUCGUCg -3'
miRNA:   3'- -UCCG--GCUGCUCCG------------GUUGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 34991 0.73 0.497032
Target:  5'- aAGGUCucCGGGGCCAGCGaGCgcuugCGUCg -3'
miRNA:   3'- -UCCGGcuGCUCCGGUUGC-CGaa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 6062 0.73 0.506236
Target:  5'- cGGGUCGACGAagggaaugcgacGGCCGguGCGGCggCGUUc -3'
miRNA:   3'- -UCCGGCUGCU------------CCGGU--UGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 206573 0.73 0.515512
Target:  5'- uAGGgCGACGGGGCCGACaGGCccCGg- -3'
miRNA:   3'- -UCCgGCUGCUCCGGUUG-CCGaaGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.