Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13975 | 3' | -58.8 | NC_003521.1 | + | 207671 | 1.1 | 0.002355 |
Target: 5'- gAGGCCGACGAGGCCAACGGCUUCGUCa -3' miRNA: 3'- -UCCGGCUGCUCCGGUUGCCGAAGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 167751 | 0.71 | 0.600511 |
Target: 5'- uGGCCGGCGgagcugaGGGUCAccgacAUGGCguggUCGUCg -3' miRNA: 3'- uCCGGCUGC-------UCCGGU-----UGCCGa---AGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 111588 | 0.71 | 0.611215 |
Target: 5'- aGGuGCCGcGCGuGGCCAGCGGCgcCGg- -3' miRNA: 3'- -UC-CGGC-UGCuCCGGUUGCCGaaGCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 184369 | 0.66 | 0.896334 |
Target: 5'- uGGCgCGGCGccucucggaccuGGGCCAcgagGCGGcCUUCGa- -3' miRNA: 3'- uCCG-GCUGC------------UCCGGU----UGCC-GAAGCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 124598 | 0.77 | 0.333307 |
Target: 5'- uGGCCGACGAGGacgacgaagcggcggCGACGGCgaCGUCu -3' miRNA: 3'- uCCGGCUGCUCCg--------------GUUGCCGaaGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 36360 | 0.75 | 0.418016 |
Target: 5'- cGGGCUGGCGuGGC--GCGGCUUCG-Cg -3' miRNA: 3'- -UCCGGCUGCuCCGguUGCCGAAGCaG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 978 | 0.74 | 0.452224 |
Target: 5'- gAGGCCGGCGgucugcucccguGGGCCGgccguACGGCUUCu-- -3' miRNA: 3'- -UCCGGCUGC------------UCCGGU-----UGCCGAAGcag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 237169 | 0.74 | 0.452224 |
Target: 5'- cGGCCGcCGAGGCaGACGGCggCGg- -3' miRNA: 3'- uCCGGCuGCUCCGgUUGCCGaaGCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 54451 | 0.74 | 0.478856 |
Target: 5'- uGGGCCGACGGGGC-GAUGGUUaUCGa- -3' miRNA: 3'- -UCCGGCUGCUCCGgUUGCCGA-AGCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 223936 | 0.72 | 0.591771 |
Target: 5'- cGGCCGAgGGGGUCGagGCGGCcgCGg- -3' miRNA: 3'- uCCGGCUgCUCCGGU--UGCCGaaGCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 181761 | 0.73 | 0.506236 |
Target: 5'- cGGCCGACGAGGaCAACGaGCUggagacggCGcUCa -3' miRNA: 3'- uCCGGCUGCUCCgGUUGC-CGAa-------GC-AG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 240635 | 0.74 | 0.458367 |
Target: 5'- cGGGCCGGcCGgucggacguguuucGGGCCGGCGGg-UCGUCg -3' miRNA: 3'- -UCCGGCU-GC--------------UCCGGUUGCCgaAGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 109361 | 0.83 | 0.14414 |
Target: 5'- gAGGCCGACGAGGCCGagagcGCGGcCUUCa-- -3' miRNA: 3'- -UCCGGCUGCUCCGGU-----UGCC-GAAGcag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 113392 | 0.73 | 0.515512 |
Target: 5'- uGGCCGACGAGccGCUGGCGGCcuaCGUg -3' miRNA: 3'- uCCGGCUGCUC--CGGUUGCCGaa-GCAg -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 177784 | 0.81 | 0.192626 |
Target: 5'- aGGGCCGACGGGGCCuguccgcugGugGGCgUCGUg -3' miRNA: 3'- -UCCGGCUGCUCCGG---------UugCCGaAGCAg -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 86 | 0.74 | 0.458367 |
Target: 5'- cGGGCCGGcCGgucggacguguuucGGGCCGGCGGg-UCGUCg -3' miRNA: 3'- -UCCGGCU-GC--------------UCCGGUUGCCgaAGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 196065 | 0.73 | 0.534263 |
Target: 5'- aAGGCCGGCGAGGUgGACuGGCg-CGa- -3' miRNA: 3'- -UCCGGCUGCUCCGgUUG-CCGaaGCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 16420 | 0.71 | 0.611215 |
Target: 5'- uGGCCGGCGAGGUguAcCGGCUggcCGa- -3' miRNA: 3'- uCCGGCUGCUCCGguU-GCCGAa--GCag -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 153659 | 0.78 | 0.285266 |
Target: 5'- uGGaCGACGAGGCC-AUGaGCUUCGUCu -3' miRNA: 3'- uCCgGCUGCUCCGGuUGC-CGAAGCAG- -5' |
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13975 | 3' | -58.8 | NC_003521.1 | + | 172115 | 0.75 | 0.418016 |
Target: 5'- cGGCCGACGGcGCC-ACGGUcaugagUUCGUCg -3' miRNA: 3'- uCCGGCUGCUcCGGuUGCCG------AAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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