miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 86 0.74 0.458367
Target:  5'- cGGGCCGGcCGgucggacguguuucGGGCCGGCGGg-UCGUCg -3'
miRNA:   3'- -UCCGGCU-GC--------------UCCGGUUGCCgaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 427 0.68 0.816052
Target:  5'- -uGCUGGCGAGGCCAAgcCGGCg--GUa -3'
miRNA:   3'- ucCGGCUGCUCCGGUU--GCCGaagCAg -5'
13975 3' -58.8 NC_003521.1 + 978 0.74 0.452224
Target:  5'- gAGGCCGGCGgucugcucccguGGGCCGgccguACGGCUUCu-- -3'
miRNA:   3'- -UCCGGCUGC------------UCCGGU-----UGCCGAAGcag -5'
13975 3' -58.8 NC_003521.1 + 6062 0.73 0.506236
Target:  5'- cGGGUCGACGAagggaaugcgacGGCCGguGCGGCggCGUUc -3'
miRNA:   3'- -UCCGGCUGCU------------CCGGU--UGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 13433 0.67 0.847802
Target:  5'- cGGUCGcCGAGGaCGACGGa--CGUCa -3'
miRNA:   3'- uCCGGCuGCUCCgGUUGCCgaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 13998 0.7 0.708182
Target:  5'- cGGCgGGCGAGGaccCCAugGcGCUguacCGUCa -3'
miRNA:   3'- uCCGgCUGCUCC---GGUugC-CGAa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 14751 0.69 0.75494
Target:  5'- cGGGCCGGcCGcGGCCGggGCGcGcCUUCGUg -3'
miRNA:   3'- -UCCGGCU-GCuCCGGU--UGC-C-GAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 15244 0.67 0.847041
Target:  5'- gAGGCCGcCGAGcGCCAggacgacACGGgUcccCGUCu -3'
miRNA:   3'- -UCCGGCuGCUC-CGGU-------UGCCgAa--GCAG- -5'
13975 3' -58.8 NC_003521.1 + 16289 0.69 0.736476
Target:  5'- gGGcGCCGugGGugccuaccGGcCCGGCGGCUUCuUCg -3'
miRNA:   3'- -UC-CGGCugCU--------CC-GGUUGCCGAAGcAG- -5'
13975 3' -58.8 NC_003521.1 + 16420 0.71 0.611215
Target:  5'- uGGCCGGCGAGGUguAcCGGCUggcCGa- -3'
miRNA:   3'- uCCGGCUGCUCCGguU-GCCGAa--GCag -5'
13975 3' -58.8 NC_003521.1 + 16688 0.69 0.764029
Target:  5'- uGGcCCGACucGGCCcACGGCcuggacaUCGUCg -3'
miRNA:   3'- uCC-GGCUGcuCCGGuUGCCGa------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 17127 0.66 0.869771
Target:  5'- gAGGUCGuCGAuccuGCCGGCGcGCUUCGcCc -3'
miRNA:   3'- -UCCGGCuGCUc---CGGUUGC-CGAAGCaG- -5'
13975 3' -58.8 NC_003521.1 + 17752 0.67 0.862635
Target:  5'- gAGGCCGGgGAacuGGCCGuaccgccgGCGGCggacgGUCa -3'
miRNA:   3'- -UCCGGCUgCU---CCGGU--------UGCCGaag--CAG- -5'
13975 3' -58.8 NC_003521.1 + 18783 0.68 0.807718
Target:  5'- cAGGCgGugGAgGGCCAGCGcuGCUuucgCGUg -3'
miRNA:   3'- -UCCGgCugCU-CCGGUUGC--CGAa---GCAg -5'
13975 3' -58.8 NC_003521.1 + 23012 0.69 0.75494
Target:  5'- cGGCaucCGAgGAGGCCAAUGGgacgcauauCUUCGUg -3'
miRNA:   3'- uCCG---GCUgCUCCGGUUGCC---------GAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 23544 0.7 0.708182
Target:  5'- cGGUgGugGuGGCCAGCGccuGCUccUCGUCc -3'
miRNA:   3'- uCCGgCugCuCCGGUUGC---CGA--AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 30205 0.67 0.840116
Target:  5'- aAGGCCGAcucCGAgaucGGCCGGCcGUUggCGUCg -3'
miRNA:   3'- -UCCGGCU---GCU----CCGGUUGcCGAa-GCAG- -5'
13975 3' -58.8 NC_003521.1 + 31558 0.68 0.813568
Target:  5'- gAGGCCGAauggcgcgucCGGGGCUcguucuuccccgaaGACGGCUuacUCGg- -3'
miRNA:   3'- -UCCGGCU----------GCUCCGG--------------UUGCCGA---AGCag -5'
13975 3' -58.8 NC_003521.1 + 31625 0.68 0.79924
Target:  5'- aGGGCCacCGcGGCCGACGGUgggGUCa -3'
miRNA:   3'- -UCCGGcuGCuCCGGUUGCCGaagCAG- -5'
13975 3' -58.8 NC_003521.1 + 32296 0.69 0.726176
Target:  5'- cGGCCGAauGGGCCAgacagcuGCGGCgcaCGUa -3'
miRNA:   3'- uCCGGCUgcUCCGGU-------UGCCGaa-GCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.