miRNA display CGI


Results 21 - 40 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 181761 0.73 0.506236
Target:  5'- cGGCCGACGAGGaCAACGaGCUggagacggCGcUCa -3'
miRNA:   3'- uCCGGCUGCUCCgGUUGC-CGAa-------GC-AG- -5'
13975 3' -58.8 NC_003521.1 + 6062 0.73 0.506236
Target:  5'- cGGGUCGACGAagggaaugcgacGGCCGguGCGGCggCGUUc -3'
miRNA:   3'- -UCCGGCUGCU------------CCGGU--UGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 113392 0.73 0.515512
Target:  5'- uGGCCGACGAGccGCUGGCGGCcuaCGUg -3'
miRNA:   3'- uCCGGCUGCUC--CGGUUGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 206573 0.73 0.515512
Target:  5'- uAGGgCGACGGGGCCGACaGGCccCGg- -3'
miRNA:   3'- -UCCgGCUGCUCCGGUUG-CCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 164677 0.73 0.524856
Target:  5'- uGGUgaaccccgugaCGACGAGGCCGGCGGCUgaCGa- -3'
miRNA:   3'- uCCG-----------GCUGCUCCGGUUGCCGAa-GCag -5'
13975 3' -58.8 NC_003521.1 + 196065 0.73 0.534263
Target:  5'- aAGGCCGGCGAGGUgGACuGGCg-CGa- -3'
miRNA:   3'- -UCCGGCUGCUCCGgUUG-CCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 72852 0.72 0.54373
Target:  5'- gGGGCggCGACGguAGGCaCGGCGGUcgUCGUCa -3'
miRNA:   3'- -UCCG--GCUGC--UCCG-GUUGCCGa-AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 210900 0.72 0.553251
Target:  5'- uGGCCGuCGccAGGCCcuuGACGGCcacgggUCGUCg -3'
miRNA:   3'- uCCGGCuGC--UCCGG---UUGCCGa-----AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 92007 0.72 0.553251
Target:  5'- cGGGagCGGCGAGGCgCGGCGGCggCGg- -3'
miRNA:   3'- -UCCg-GCUGCUCCG-GUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 53182 0.72 0.553251
Target:  5'- -cGCCGAUGAagauGGCCAGCGGCgcgCGg- -3'
miRNA:   3'- ucCGGCUGCU----CCGGUUGCCGaa-GCag -5'
13975 3' -58.8 NC_003521.1 + 145875 0.72 0.572434
Target:  5'- cGGGCggcgccgaCGACGAGGCCGcCGGCggCGg- -3'
miRNA:   3'- -UCCG--------GCUGCUCCGGUuGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 223936 0.72 0.591771
Target:  5'- cGGCCGAgGGGGUCGagGCGGCcgCGg- -3'
miRNA:   3'- uCCGGCUgCUCCGGU--UGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 167751 0.71 0.600511
Target:  5'- uGGCCGGCGgagcugaGGGUCAccgacAUGGCguggUCGUCg -3'
miRNA:   3'- uCCGGCUGC-------UCCGGU-----UGCCGa---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 218619 0.71 0.60732
Target:  5'- cGGCCGccagcgcGCGGcgguaagcggccacGGCCGGCGGCgccUCGUCc -3'
miRNA:   3'- uCCGGC-------UGCU--------------CCGGUUGCCGa--AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 16420 0.71 0.611215
Target:  5'- uGGCCGGCGAGGUguAcCGGCUggcCGa- -3'
miRNA:   3'- uCCGGCUGCUCCGguU-GCCGAa--GCag -5'
13975 3' -58.8 NC_003521.1 + 111588 0.71 0.611215
Target:  5'- aGGuGCCGcGCGuGGCCAGCGGCgcCGg- -3'
miRNA:   3'- -UC-CGGC-UGCuCCGGUUGCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 168422 0.71 0.620961
Target:  5'- aGGGCgGGCGgcaGGGCCGcgGCGGCgggCGUg -3'
miRNA:   3'- -UCCGgCUGC---UCCGGU--UGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 113769 0.71 0.627789
Target:  5'- cAGGCgcgucgacgaCGGCGAcGGCCAgcgcgacgggcaccGCGGCggcgUCGUCg -3'
miRNA:   3'- -UCCG----------GCUGCU-CCGGU--------------UGCCGa---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 72983 0.71 0.64047
Target:  5'- -aGCCGACGA-GCCcGCGGCggUCGUg -3'
miRNA:   3'- ucCGGCUGCUcCGGuUGCCGa-AGCAg -5'
13975 3' -58.8 NC_003521.1 + 183688 0.71 0.65022
Target:  5'- uGGCCGACGAGaCCuAUcGCUUCGUg -3'
miRNA:   3'- uCCGGCUGCUCcGGuUGcCGAAGCAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.