miRNA display CGI


Results 21 - 40 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 115839 0.66 0.883458
Target:  5'- aGGcGCUGGCucAGGCgGGCGGCgcacgccUCGUCa -3'
miRNA:   3'- -UC-CGGCUGc-UCCGgUUGCCGa------AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 213037 0.66 0.883458
Target:  5'- cGGCCGAgCG-GGCCGGaguaGGUUUCuUCc -3'
miRNA:   3'- uCCGGCU-GCuCCGGUUg---CCGAAGcAG- -5'
13975 3' -58.8 NC_003521.1 + 57144 0.66 0.883458
Target:  5'- uAGGUCu-CGucGGCCAcgcGCGGCaggUCGUCg -3'
miRNA:   3'- -UCCGGcuGCu-CCGGU---UGCCGa--AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 90096 0.66 0.883458
Target:  5'- cGGCCcagGACGuGGCCcACGGCcgagagccaGUCg -3'
miRNA:   3'- uCCGG---CUGCuCCGGuUGCCGaag------CAG- -5'
13975 3' -58.8 NC_003521.1 + 36988 0.66 0.883458
Target:  5'- cGGCgacauccgCGACGAGGgCGucGCGGCggaGUCa -3'
miRNA:   3'- uCCG--------GCUGCUCCgGU--UGCCGaagCAG- -5'
13975 3' -58.8 NC_003521.1 + 59752 0.66 0.883458
Target:  5'- cGGGCCGGaccuGGUgAGCaGCUUCGUg -3'
miRNA:   3'- -UCCGGCUgcu-CCGgUUGcCGAAGCAg -5'
13975 3' -58.8 NC_003521.1 + 207173 0.66 0.876714
Target:  5'- aGGGCCGucugaauccaGCGGGaugugaGCCGcucgGCGGCaUCGUCc -3'
miRNA:   3'- -UCCGGC----------UGCUC------CGGU----UGCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 77724 0.66 0.876714
Target:  5'- uGG-CGACGGcGGCCucgGugGGCggCGUCu -3'
miRNA:   3'- uCCgGCUGCU-CCGG---UugCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 50530 0.66 0.876714
Target:  5'- uGGGCCG-CGGGGUUcGCGGCaguaUCG-Ca -3'
miRNA:   3'- -UCCGGCuGCUCCGGuUGCCGa---AGCaG- -5'
13975 3' -58.8 NC_003521.1 + 95217 0.66 0.876714
Target:  5'- cGGGUgCGacugcagcaGCGAGGCC-ACGGCcgccgCGUCg -3'
miRNA:   3'- -UCCG-GC---------UGCUCCGGuUGCCGaa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 165739 0.66 0.876714
Target:  5'- uGGuuGAUGaAGGCCAccAUGGCgUCGg- -3'
miRNA:   3'- uCCggCUGC-UCCGGU--UGCCGaAGCag -5'
13975 3' -58.8 NC_003521.1 + 98612 0.66 0.87396
Target:  5'- gAGGCCauGGCGAGGagggcgagagcggCGGCGGCgguagcggCGUCg -3'
miRNA:   3'- -UCCGG--CUGCUCCg------------GUUGCCGaa------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 86658 0.66 0.869771
Target:  5'- cGGCCGACGAcagguugaGGaUCAGCG-CgUCGUCg -3'
miRNA:   3'- uCCGGCUGCU--------CC-GGUUGCcGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 86267 0.66 0.869771
Target:  5'- cGGCCGGCGAGGCgAAguugggggUGGCgcccaacaCGUa -3'
miRNA:   3'- uCCGGCUGCUCCGgUU--------GCCGaa------GCAg -5'
13975 3' -58.8 NC_003521.1 + 17127 0.66 0.869771
Target:  5'- gAGGUCGuCGAuccuGCCGGCGcGCUUCGcCc -3'
miRNA:   3'- -UCCGGCuGCUc---CGGUUGC-CGAAGCaG- -5'
13975 3' -58.8 NC_003521.1 + 53370 0.66 0.86694
Target:  5'- gGGGCCGACaGAccgagcaggagcaGGCCG-CGGCgagcaggggauggcgCGUCg -3'
miRNA:   3'- -UCCGGCUG-CU-------------CCGGUuGCCGaa-------------GCAG- -5'
13975 3' -58.8 NC_003521.1 + 219401 0.67 0.862635
Target:  5'- cGGGCaCGACGAGGCCGaguagcugccagAgGGC--CGUa -3'
miRNA:   3'- -UCCG-GCUGCUCCGGU------------UgCCGaaGCAg -5'
13975 3' -58.8 NC_003521.1 + 69263 0.67 0.862635
Target:  5'- uGGCCGACGuGGCaAGCGGUc-UGUUu -3'
miRNA:   3'- uCCGGCUGCuCCGgUUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 214986 0.67 0.862635
Target:  5'- cGGCCaGGgGGGugcgaGCCAGCGGCgucUCGUa -3'
miRNA:   3'- uCCGG-CUgCUC-----CGGUUGCCGa--AGCAg -5'
13975 3' -58.8 NC_003521.1 + 86172 0.67 0.862635
Target:  5'- -uGCCGGCcucGGCCAGCGGCa-CGUg -3'
miRNA:   3'- ucCGGCUGcu-CCGGUUGCCGaaGCAg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.