miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 3' -58.8 NC_003521.1 + 38312 0.7 0.659956
Target:  5'- cAGGCCGAgGcacGGCCAAgGGCgauggCGUUu -3'
miRNA:   3'- -UCCGGCUgCu--CCGGUUgCCGaa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 59094 0.7 0.669671
Target:  5'- cGGCCG-CuuGGCCAGCGuGCgcgCGUCc -3'
miRNA:   3'- uCCGGCuGcuCCGGUUGC-CGaa-GCAG- -5'
13975 3' -58.8 NC_003521.1 + 39445 0.7 0.67936
Target:  5'- cGGCCGAgccCGGcGCCGAgGGCcgCGUCg -3'
miRNA:   3'- uCCGGCU---GCUcCGGUUgCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 166923 0.7 0.689013
Target:  5'- gAGGuaGACGGGGCCcACGGCcUUG-Cg -3'
miRNA:   3'- -UCCggCUGCUCCGGuUGCCGaAGCaG- -5'
13975 3' -58.8 NC_003521.1 + 181312 0.7 0.698622
Target:  5'- cAGGCCGcccGCG-GGCCAG-GGCgcCGUCu -3'
miRNA:   3'- -UCCGGC---UGCuCCGGUUgCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 182370 0.7 0.698622
Target:  5'- uGGUCGACGuGGUgcgcggaaaguuCGcccggcagcgcuGCGGCUUCGUCa -3'
miRNA:   3'- uCCGGCUGCuCCG------------GU------------UGCCGAAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 46447 0.7 0.698622
Target:  5'- gGGGCUG-CgGGGGCUGGuCGGCcUCGUCg -3'
miRNA:   3'- -UCCGGCuG-CUCCGGUU-GCCGaAGCAG- -5'
13975 3' -58.8 NC_003521.1 + 87768 0.7 0.698622
Target:  5'- cGGCgGAgGAGGCCuGGgGGCcgccUCGUCg -3'
miRNA:   3'- uCCGgCUgCUCCGG-UUgCCGa---AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 23544 0.7 0.708182
Target:  5'- cGGUgGugGuGGCCAGCGccuGCUccUCGUCc -3'
miRNA:   3'- uCCGgCugCuCCGGUUGC---CGA--AGCAG- -5'
13975 3' -58.8 NC_003521.1 + 13998 0.7 0.708182
Target:  5'- cGGCgGGCGAGGaccCCAugGcGCUguacCGUCa -3'
miRNA:   3'- uCCGgCUGCUCC---GGUugC-CGAa---GCAG- -5'
13975 3' -58.8 NC_003521.1 + 123560 0.7 0.708182
Target:  5'- cGGCCGACGAcGGCgGuggcgggaugGCGGCggCGcCg -3'
miRNA:   3'- uCCGGCUGCU-CCGgU----------UGCCGaaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 150707 0.7 0.708182
Target:  5'- -cGCCGGCGGcgacuggcucucGGCCGugGGCcaCGUCc -3'
miRNA:   3'- ucCGGCUGCU------------CCGGUugCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 48705 0.7 0.711989
Target:  5'- cGGaGCCGACGAGGCCGGgagagguggagacgcCGGCgaCGc- -3'
miRNA:   3'- -UC-CGGCUGCUCCGGUU---------------GCCGaaGCag -5'
13975 3' -58.8 NC_003521.1 + 197001 0.69 0.717682
Target:  5'- cGGCCGGCGGcGGCUGAccCGGCUgcugCGa- -3'
miRNA:   3'- uCCGGCUGCU-CCGGUU--GCCGAa---GCag -5'
13975 3' -58.8 NC_003521.1 + 123974 0.69 0.717682
Target:  5'- cAGGUCGuCGcGGUCGGCGGC--CGUCa -3'
miRNA:   3'- -UCCGGCuGCuCCGGUUGCCGaaGCAG- -5'
13975 3' -58.8 NC_003521.1 + 32296 0.69 0.726176
Target:  5'- cGGCCGAauGGGCCAgacagcuGCGGCgcaCGUa -3'
miRNA:   3'- uCCGGCUgcUCCGGU-------UGCCGaa-GCAg -5'
13975 3' -58.8 NC_003521.1 + 125793 0.69 0.727116
Target:  5'- cGGCCuGCGAGGcCCAGgGGUUgugCGUg -3'
miRNA:   3'- uCCGGcUGCUCC-GGUUgCCGAa--GCAg -5'
13975 3' -58.8 NC_003521.1 + 153444 0.69 0.727116
Target:  5'- cGGUCGcgcuCGuAGGCCAGCGGCU-CG-Ca -3'
miRNA:   3'- uCCGGCu---GC-UCCGGUUGCCGAaGCaG- -5'
13975 3' -58.8 NC_003521.1 + 35972 0.69 0.727116
Target:  5'- uGGgCGACGAGGaCGACgaaccgGGCUUgGUCa -3'
miRNA:   3'- uCCgGCUGCUCCgGUUG------CCGAAgCAG- -5'
13975 3' -58.8 NC_003521.1 + 122520 0.69 0.727116
Target:  5'- cGGCgGGC-AGGCCGGCGGCggUGg- -3'
miRNA:   3'- uCCGgCUGcUCCGGUUGCCGaaGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.