miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 5' -57.8 NC_003521.1 + 103558 0.67 0.839432
Target:  5'- gCUGGGGcccccgcucuGC-CCGCUGcCGCCGUCGg -3'
miRNA:   3'- -GACCUCuu--------CGcGGCGAU-GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 103887 0.67 0.8549
Target:  5'- -gGGGGAuGgGCUGCcGCGCgGUCAg -3'
miRNA:   3'- gaCCUCUuCgCGGCGaUGCGgCAGUa -5'
13975 5' -57.8 NC_003521.1 + 109566 0.67 0.868894
Target:  5'- -cGGuGAaaucaaaAGCGCCGCUcccgucggcauCGCCGUCGc -3'
miRNA:   3'- gaCCuCU-------UCGCGGCGAu----------GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 109719 0.68 0.823257
Target:  5'- -cGGcAGccGCGCCGCccCGCCGUCc- -3'
miRNA:   3'- gaCC-UCuuCGCGGCGauGCGGCAGua -5'
13975 5' -57.8 NC_003521.1 + 112193 0.69 0.780098
Target:  5'- uCUGGAGggGCGCguguccgaaGCggagGCGCUGcUCAa -3'
miRNA:   3'- -GACCUCuuCGCGg--------CGa---UGCGGC-AGUa -5'
13975 5' -57.8 NC_003521.1 + 112935 0.66 0.896598
Target:  5'- -aGcGAGAcGGUGCCGCUgugcACGCCGcgCAUc -3'
miRNA:   3'- gaC-CUCU-UCGCGGCGA----UGCGGCa-GUA- -5'
13975 5' -57.8 NC_003521.1 + 113847 0.67 0.839432
Target:  5'- gCUGGGGuuucuuccGAGCGUgGCggugguguaaGCGCCGUCAc -3'
miRNA:   3'- -GACCUC--------UUCGCGgCGa---------UGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 114939 0.75 0.434132
Target:  5'- gCUGGAGAgcugcucgcgcagcGGCgGCUGCUGCGgCGUCAg -3'
miRNA:   3'- -GACCUCU--------------UCG-CGGCGAUGCgGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 115067 0.67 0.876669
Target:  5'- -cGGAGAAGCccgacgucGCCcagaaacccuGCUccuGCGCCGUCGc -3'
miRNA:   3'- gaCCUCUUCG--------CGG----------CGA---UGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 116914 0.78 0.304437
Target:  5'- gUGGAGAacAGCGCCGC-GCGCCGaCAg -3'
miRNA:   3'- gACCUCU--UCGCGGCGaUGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 123590 0.67 0.869611
Target:  5'- -cGGcgccGGGAGcCGCCGCg--GCCGUCAg -3'
miRNA:   3'- gaCC----UCUUC-GCGGCGaugCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 129426 0.67 0.862353
Target:  5'- aUGGGGGAGcCGCUGCaGCGCguccccucCGUCGc -3'
miRNA:   3'- gACCUCUUC-GCGGCGaUGCG--------GCAGUa -5'
13975 5' -57.8 NC_003521.1 + 130295 0.66 0.890167
Target:  5'- cCUGGGcGAG-GCCGCgGCGCCGcgCAUc -3'
miRNA:   3'- -GACCUcUUCgCGGCGaUGCGGCa-GUA- -5'
13975 5' -57.8 NC_003521.1 + 133935 0.73 0.567046
Target:  5'- cCUGGuGGcgcuGCGCCGCUACuaCCGUCAc -3'
miRNA:   3'- -GACCuCUu---CGCGGCGAUGc-GGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 134207 0.75 0.454366
Target:  5'- -cGGAGAAGCgcugguGCCGCUugGCCGa--- -3'
miRNA:   3'- gaCCUCUUCG------CGGCGAugCGGCagua -5'
13975 5' -57.8 NC_003521.1 + 135652 0.66 0.896598
Target:  5'- -gGGGGGcccAGCGUCgGCgGCGUCGUCAc -3'
miRNA:   3'- gaCCUCU---UCGCGG-CGaUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 138032 0.69 0.761907
Target:  5'- --cGAGcuGGCgGCCGCcgGCGCCGUCAUc -3'
miRNA:   3'- gacCUCu-UCG-CGGCGa-UGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 140794 0.76 0.378319
Target:  5'- gCUGGAcGAGcCGCUGCUGCGUCGUCu- -3'
miRNA:   3'- -GACCUcUUC-GCGGCGAUGCGGCAGua -5'
13975 5' -57.8 NC_003521.1 + 141624 0.67 0.847257
Target:  5'- -aGGAcu-GCGCCGCg--GCCGUCAc -3'
miRNA:   3'- gaCCUcuuCGCGGCGaugCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 142641 0.67 0.852627
Target:  5'- -aGGAGAaccgcggccucagcGGuCGgCGCaGCGCCGUCAg -3'
miRNA:   3'- gaCCUCU--------------UC-GCgGCGaUGCGGCAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.