miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 5' -57.8 NC_003521.1 + 59409 0.67 0.869611
Target:  5'- cCUGGAGAAGUucgugGCaCGCgacagcgGCGCCGcCGc -3'
miRNA:   3'- -GACCUCUUCG-----CG-GCGa------UGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 61839 0.7 0.714689
Target:  5'- cCUGGGaGGGCGCCGCggaaccgcgGCGCCuGUCc- -3'
miRNA:   3'- -GACCUcUUCGCGGCGa--------UGCGG-CAGua -5'
13975 5' -57.8 NC_003521.1 + 63421 0.67 0.862353
Target:  5'- -cGGGGAAGCggcccGCCGCguauauCGCCGaUCGc -3'
miRNA:   3'- gaCCUCUUCG-----CGGCGau----GCGGC-AGUa -5'
13975 5' -57.8 NC_003521.1 + 65371 0.67 0.8549
Target:  5'- -gGGAGAcggcGCGCCGCcgaucgUACGCCGagCAc -3'
miRNA:   3'- gaCCUCUu---CGCGGCG------AUGCGGCa-GUa -5'
13975 5' -57.8 NC_003521.1 + 67284 0.67 0.862353
Target:  5'- -gGGAGGAcaGCCGCUGCGCCu---- -3'
miRNA:   3'- gaCCUCUUcgCGGCGAUGCGGcagua -5'
13975 5' -57.8 NC_003521.1 + 71368 0.68 0.823257
Target:  5'- cCUGGcgacGAAcccGcCGCCGCcgACGCCGUCGUc -3'
miRNA:   3'- -GACCu---CUU---C-GCGGCGa-UGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 74158 0.66 0.908809
Target:  5'- -cGGGGcccAGGUGCCGCUggccgacuGCGCCG-CGg -3'
miRNA:   3'- gaCCUC---UUCGCGGCGA--------UGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 74345 0.68 0.823257
Target:  5'- gCUGGAu-GGCGCUGCUGCGCgGc--- -3'
miRNA:   3'- -GACCUcuUCGCGGCGAUGCGgCagua -5'
13975 5' -57.8 NC_003521.1 + 75980 0.69 0.78901
Target:  5'- --cGAGGAGCGgcccUCGCcggGCGCCGUCAg -3'
miRNA:   3'- gacCUCUUCGC----GGCGa--UGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 77045 0.67 0.8549
Target:  5'- gUGGu--GGCGCCGCUAccguuguugcCGCCGcCGUg -3'
miRNA:   3'- gACCucuUCGCGGCGAU----------GCGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 78610 0.67 0.839432
Target:  5'- -cGGAGAGGCaCCGaCUGCGCgGcUCGc -3'
miRNA:   3'- gaCCUCUUCGcGGC-GAUGCGgC-AGUa -5'
13975 5' -57.8 NC_003521.1 + 78680 0.68 0.797791
Target:  5'- -aGGGGAAGcCGCCGuCUGCGC--UCAUg -3'
miRNA:   3'- gaCCUCUUC-GCGGC-GAUGCGgcAGUA- -5'
13975 5' -57.8 NC_003521.1 + 82850 0.71 0.646031
Target:  5'- -gGGcGGcGGCGUCGCUaccaGCGCCGUCGUc -3'
miRNA:   3'- gaCC-UCuUCGCGGCGA----UGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 85561 0.66 0.908809
Target:  5'- -cGGGccuGAGGCGCCGC--CGCCGcCGc -3'
miRNA:   3'- gaCCU---CUUCGCGGCGauGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 90254 0.7 0.714689
Target:  5'- -aGGAGccGCGCCGCcgcCGCCGcCAc -3'
miRNA:   3'- gaCCUCuuCGCGGCGau-GCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 93728 0.66 0.914583
Target:  5'- -cGGAGAAaaGUCGCgugaGCCGUCGg -3'
miRNA:   3'- gaCCUCUUcgCGGCGaug-CGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 97605 0.67 0.8549
Target:  5'- uUGGAGcAGGUGCaguGC-ACGUCGUCGUg -3'
miRNA:   3'- gACCUC-UUCGCGg--CGaUGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 98135 0.69 0.78901
Target:  5'- -cGGAGuccguGGUaGCUGCUGcCGCCGUCGc -3'
miRNA:   3'- gaCCUCu----UCG-CGGCGAU-GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 102483 0.66 0.908809
Target:  5'- --aGAGAGGC-CCGagACGCCGUCGc -3'
miRNA:   3'- gacCUCUUCGcGGCgaUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 102593 0.66 0.914583
Target:  5'- -cGGGGcuGGCGCUgGCcACGUCGUCGUc -3'
miRNA:   3'- gaCCUCu-UCGCGG-CGaUGCGGCAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.