miRNA display CGI


Results 21 - 40 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 5' -57.8 NC_003521.1 + 102593 0.66 0.914583
Target:  5'- -cGGGGcuGGCGCUgGCcACGUCGUCGUc -3'
miRNA:   3'- gaCCUCu-UCGCGG-CGaUGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 29688 0.66 0.890167
Target:  5'- aCUGGAGGAuGauCCGCUGCGUCcUCGg -3'
miRNA:   3'- -GACCUCUU-CgcGGCGAUGCGGcAGUa -5'
13975 5' -57.8 NC_003521.1 + 65371 0.67 0.8549
Target:  5'- -gGGAGAcggcGCGCCGCcgaucgUACGCCGagCAc -3'
miRNA:   3'- gaCCUCUu---CGCGGCG------AUGCGGCa-GUa -5'
13975 5' -57.8 NC_003521.1 + 8922 0.67 0.8549
Target:  5'- -gGGAGAAGaGCCGCUGcCGCagGUUAc -3'
miRNA:   3'- gaCCUCUUCgCGGCGAU-GCGg-CAGUa -5'
13975 5' -57.8 NC_003521.1 + 59409 0.67 0.869611
Target:  5'- cCUGGAGAAGUucgugGCaCGCgacagcgGCGCCGcCGc -3'
miRNA:   3'- -GACCUCUUCG-----CG-GCGa------UGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 115067 0.67 0.876669
Target:  5'- -cGGAGAAGCccgacgucGCCcagaaacccuGCUccuGCGCCGUCGc -3'
miRNA:   3'- gaCCUCUUCG--------CGG----------CGA---UGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 143173 0.67 0.876669
Target:  5'- gUGGGGGucggacccGGCGCCGCcGCGaaCGUCGa -3'
miRNA:   3'- gACCUCU--------UCGCGGCGaUGCg-GCAGUa -5'
13975 5' -57.8 NC_003521.1 + 142641 0.67 0.852627
Target:  5'- -aGGAGAaccgcggccucagcGGuCGgCGCaGCGCCGUCAg -3'
miRNA:   3'- gaCCUCU--------------UC-GCgGCGaUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 220944 0.67 0.847257
Target:  5'- -aGGAucAGCGCCGacGCGgCCGUCAg -3'
miRNA:   3'- gaCCUcuUCGCGGCgaUGC-GGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 77045 0.67 0.8549
Target:  5'- gUGGu--GGCGCCGCUAccguuguugcCGCCGcCGUg -3'
miRNA:   3'- gACCucuUCGCGGCGAU----------GCGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 78610 0.67 0.839432
Target:  5'- -cGGAGAGGCaCCGaCUGCGCgGcUCGc -3'
miRNA:   3'- gaCCUCUUCGcGGC-GAUGCGgC-AGUa -5'
13975 5' -57.8 NC_003521.1 + 200462 0.67 0.862353
Target:  5'- gUGGAGAAG-GCCcuGCgcaGCGCCGUgAUc -3'
miRNA:   3'- gACCUCUUCgCGG--CGa--UGCGGCAgUA- -5'
13975 5' -57.8 NC_003521.1 + 109566 0.67 0.868894
Target:  5'- -cGGuGAaaucaaaAGCGCCGCUcccgucggcauCGCCGUCGc -3'
miRNA:   3'- gaCCuCU-------UCGCGGCGAu----------GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 123590 0.67 0.869611
Target:  5'- -cGGcgccGGGAGcCGCCGCg--GCCGUCAg -3'
miRNA:   3'- gaCC----UCUUC-GCGGCGaugCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 103558 0.67 0.839432
Target:  5'- gCUGGGGcccccgcucuGC-CCGCUGcCGCCGUCGg -3'
miRNA:   3'- -GACCUCuu--------CGcGGCGAU-GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 63421 0.67 0.862353
Target:  5'- -cGGGGAAGCggcccGCCGCguauauCGCCGaUCGc -3'
miRNA:   3'- gaCCUCUUCG-----CGGCGau----GCGGC-AGUa -5'
13975 5' -57.8 NC_003521.1 + 129426 0.67 0.862353
Target:  5'- aUGGGGGAGcCGCUGCaGCGCguccccucCGUCGc -3'
miRNA:   3'- gACCUCUUC-GCGGCGaUGCG--------GCAGUa -5'
13975 5' -57.8 NC_003521.1 + 35350 0.67 0.837845
Target:  5'- -aGGAGGAGUGCCGUcgucgaggaacgACGCCGa--- -3'
miRNA:   3'- gaCCUCUUCGCGGCGa-----------UGCGGCagua -5'
13975 5' -57.8 NC_003521.1 + 113847 0.67 0.839432
Target:  5'- gCUGGGGuuucuuccGAGCGUgGCggugguguaaGCGCCGUCAc -3'
miRNA:   3'- -GACCUC--------UUCGCGgCGa---------UGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 141624 0.67 0.847257
Target:  5'- -aGGAcu-GCGCCGCg--GCCGUCAc -3'
miRNA:   3'- gaCCUcuuCGCGGCGaugCGGCAGUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.