miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 5' -57.8 NC_003521.1 + 212816 0.7 0.685497
Target:  5'- gCUGGAGGaggacagcgaGGUGCCGCUcACGCUGcCGc -3'
miRNA:   3'- -GACCUCU----------UCGCGGCGA-UGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 172459 0.7 0.69528
Target:  5'- -aGGGGAGGCaggGCCgGCagcggUGCGCCGUCGg -3'
miRNA:   3'- gaCCUCUUCG---CGG-CG-----AUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 239229 0.7 0.69528
Target:  5'- gCUGGuGGAuguGGCGCUGC-ACGgCCGUCAg -3'
miRNA:   3'- -GACC-UCU---UCGCGGCGaUGC-GGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 39001 0.7 0.69528
Target:  5'- gCUGGuGGAuguGGCGCUGC-ACGgCCGUCAg -3'
miRNA:   3'- -GACC-UCU---UCGCGGCGaUGC-GGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 167596 0.7 0.705014
Target:  5'- aUGGAGAgcggcgcgcagaGGCGCCGCagGCGCUcgggGUCGg -3'
miRNA:   3'- gACCUCU------------UCGCGGCGa-UGCGG----CAGUa -5'
13975 5' -57.8 NC_003521.1 + 165175 0.7 0.705014
Target:  5'- aUGGuGGGAcuGCGCCGCUGuugcCGUCGUCAUc -3'
miRNA:   3'- gACC-UCUU--CGCGGCGAU----GCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 153906 0.7 0.707923
Target:  5'- -aGGGGAacAGCGCCGCgugcagcuuccacUccucggccacccgccGCGCCGUCAUg -3'
miRNA:   3'- gaCCUCU--UCGCGGCG-------------A---------------UGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 90254 0.7 0.714689
Target:  5'- -aGGAGccGCGCCGCcgcCGCCGcCAc -3'
miRNA:   3'- gaCCUCuuCGCGGCGau-GCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 61839 0.7 0.714689
Target:  5'- cCUGGGaGGGCGCCGCggaaccgcgGCGCCuGUCc- -3'
miRNA:   3'- -GACCUcUUCGCGGCGa--------UGCGG-CAGua -5'
13975 5' -57.8 NC_003521.1 + 218224 0.7 0.733833
Target:  5'- -cGGAGGucaGGCGaCCGCagGgGCCGUCAc -3'
miRNA:   3'- gaCCUCU---UCGC-GGCGa-UgCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 172770 0.7 0.733833
Target:  5'- uCUGGcugccaccGGggGCGCCGCggaccACGCCGccCGUg -3'
miRNA:   3'- -GACC--------UCuuCGCGGCGa----UGCGGCa-GUA- -5'
13975 5' -57.8 NC_003521.1 + 152629 0.69 0.743285
Target:  5'- cCUGGAGAAGgaccaccugaUGCUcaGCgACGCCGUCAc -3'
miRNA:   3'- -GACCUCUUC----------GCGG--CGaUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 172397 0.69 0.743285
Target:  5'- --uGAGggGCGCCgGCggaGCCGUCGc -3'
miRNA:   3'- gacCUCuuCGCGG-CGaugCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 166121 0.69 0.752646
Target:  5'- -gGGAGccGCuGCCGCggcgcCGCCGUCGc -3'
miRNA:   3'- gaCCUCuuCG-CGGCGau---GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 35789 0.69 0.760986
Target:  5'- -cGGAcGAaacggauccaucgGGCGUCGCggcACGCCGUCGUu -3'
miRNA:   3'- gaCCU-CU-------------UCGCGGCGa--UGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 19451 0.69 0.760986
Target:  5'- -gGGGGAGGCGCggcgggaccauguCGCUGCGCgGcCAg -3'
miRNA:   3'- gaCCUCUUCGCG-------------GCGAUGCGgCaGUa -5'
13975 5' -57.8 NC_003521.1 + 138032 0.69 0.761907
Target:  5'- --cGAGcuGGCgGCCGCcgGCGCCGUCAUc -3'
miRNA:   3'- gacCUCu-UCG-CGGCGa-UGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 163949 0.69 0.771061
Target:  5'- -aGGAGGAGUcucgGCCGCggACGCCGa--- -3'
miRNA:   3'- gaCCUCUUCG----CGGCGa-UGCGGCagua -5'
13975 5' -57.8 NC_003521.1 + 112193 0.69 0.780098
Target:  5'- uCUGGAGggGCGCguguccgaaGCggagGCGCUGcUCAa -3'
miRNA:   3'- -GACCUCuuCGCGg--------CGa---UGCGGC-AGUa -5'
13975 5' -57.8 NC_003521.1 + 75980 0.69 0.78901
Target:  5'- --cGAGGAGCGgcccUCGCcggGCGCCGUCAg -3'
miRNA:   3'- gacCUCUUCGC----GGCGa--UGCGGCAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.