miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 5' -57.8 NC_003521.1 + 207706 0.87 0.079143
Target:  5'- gCUGGAGAAgGC-CCGCUACGCCGUCAUc -3'
miRNA:   3'- -GACCUCUU-CGcGGCGAUGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 49665 0.78 0.303757
Target:  5'- uCUGGAGAGGgGCCgggcgagcgcggcGCUGuCGCCGUCAg -3'
miRNA:   3'- -GACCUCUUCgCGG-------------CGAU-GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 116914 0.78 0.304437
Target:  5'- gUGGAGAacAGCGCCGC-GCGCCGaCAg -3'
miRNA:   3'- gACCUCU--UCGCGGCGaUGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 159841 0.78 0.318282
Target:  5'- -aGGAGAAGgGCCGCUGCuacucgcgccccGUCGUCAUg -3'
miRNA:   3'- gaCCUCUUCgCGGCGAUG------------CGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 157049 0.77 0.354938
Target:  5'- -cGGAGGAGCGCgGCgggggGCGCCGcCAc -3'
miRNA:   3'- gaCCUCUUCGCGgCGa----UGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 140794 0.76 0.378319
Target:  5'- gCUGGAcGAGcCGCUGCUGCGUCGUCu- -3'
miRNA:   3'- -GACCUcUUC-GCGGCGAUGCGGCAGua -5'
13975 5' -57.8 NC_003521.1 + 183908 0.76 0.386339
Target:  5'- gCUGGAGGcGGUGCUGCgGCGCUGUCGc -3'
miRNA:   3'- -GACCUCU-UCGCGGCGaUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 114939 0.75 0.434132
Target:  5'- gCUGGAGAgcugcucgcgcagcGGCgGCUGCUGCGgCGUCAg -3'
miRNA:   3'- -GACCUCU--------------UCG-CGGCGAUGCgGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 185100 0.75 0.445505
Target:  5'- gCUGG-GAGGCGCUGC-GCGCCGaCAUg -3'
miRNA:   3'- -GACCuCUUCGCGGCGaUGCGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 134207 0.75 0.454366
Target:  5'- -cGGAGAAGCgcugguGCCGCUugGCCGa--- -3'
miRNA:   3'- gaCCUCUUCG------CGGCGAugCGGCagua -5'
13975 5' -57.8 NC_003521.1 + 168932 0.74 0.490724
Target:  5'- -aGGAGGgcgcaggcagGGcCGCCGCUGuCGCCGUCGc -3'
miRNA:   3'- gaCCUCU----------UC-GCGGCGAU-GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 45275 0.74 0.490724
Target:  5'- cCUGGAGAucauggaccgGGCGCCGCUGgGCCa---- -3'
miRNA:   3'- -GACCUCU----------UCGCGGCGAUgCGGcagua -5'
13975 5' -57.8 NC_003521.1 + 27742 0.74 0.509404
Target:  5'- -aGGAGAacgAGCGCCGCgAUGUCGUCc- -3'
miRNA:   3'- gaCCUCU---UCGCGGCGaUGCGGCAGua -5'
13975 5' -57.8 NC_003521.1 + 200317 0.73 0.528376
Target:  5'- gCUGGAGGAguucgagauGCGCUGCgGCGCCGUgGc -3'
miRNA:   3'- -GACCUCUU---------CGCGGCGaUGCGGCAgUa -5'
13975 5' -57.8 NC_003521.1 + 133935 0.73 0.567046
Target:  5'- cCUGGuGGcgcuGCGCCGCUACuaCCGUCAc -3'
miRNA:   3'- -GACCuCUu---CGCGGCGAUGc-GGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 1483 0.72 0.596516
Target:  5'- aUGGGGAA-CGCCGCUACaCCGcCAUg -3'
miRNA:   3'- gACCUCUUcGCGGCGAUGcGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 183318 0.71 0.646031
Target:  5'- -cGuGAucAGCGCCGUgcGCGCCGUCAUg -3'
miRNA:   3'- gaC-CUcuUCGCGGCGa-UGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 82850 0.71 0.646031
Target:  5'- -gGGcGGcGGCGUCGCUaccaGCGCCGUCGUc -3'
miRNA:   3'- gaCC-UCuUCGCGGCGA----UGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 223342 0.71 0.655932
Target:  5'- -cGGc--GGCGCCGCUACcgguGCCGUCGUc -3'
miRNA:   3'- gaCCucuUCGCGGCGAUG----CGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 49815 0.71 0.675673
Target:  5'- aUGGcuGGGCGCCGUgcagUGCGCCGUgCAg -3'
miRNA:   3'- gACCucUUCGCGGCG----AUGCGGCA-GUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.