miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 5' -57.8 NC_003521.1 + 1483 0.72 0.596516
Target:  5'- aUGGGGAA-CGCCGCUACaCCGcCAUg -3'
miRNA:   3'- gACCUCUUcGCGGCGAUGcGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 5667 0.66 0.890167
Target:  5'- gUGGGGGgucgagacacgGGCGCCcguccGCggggaacggGCGCCGUCAc -3'
miRNA:   3'- gACCUCU-----------UCGCGG-----CGa--------UGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 6237 0.66 0.890167
Target:  5'- aUGGAGAccGGCGCuccCGCggACGCCGa--- -3'
miRNA:   3'- gACCUCU--UCGCG---GCGa-UGCGGCagua -5'
13975 5' -57.8 NC_003521.1 + 6386 0.68 0.814921
Target:  5'- -cGGAGggGCGCCGCaGCuaCCG-CGg -3'
miRNA:   3'- gaCCUCuuCGCGGCGaUGc-GGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 8922 0.67 0.8549
Target:  5'- -gGGAGAAGaGCCGCUGcCGCagGUUAc -3'
miRNA:   3'- gaCCUCUUCgCGGCGAU-GCGg-CAGUa -5'
13975 5' -57.8 NC_003521.1 + 18789 0.66 0.908809
Target:  5'- gUGGAGGgccAGCGCUGCUuucGCGUgGcCAa -3'
miRNA:   3'- gACCUCU---UCGCGGCGA---UGCGgCaGUa -5'
13975 5' -57.8 NC_003521.1 + 18921 0.66 0.883522
Target:  5'- -aGGGu-GGCGCCGC-GCGCCGgCAa -3'
miRNA:   3'- gaCCUcuUCGCGGCGaUGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 19451 0.69 0.760986
Target:  5'- -gGGGGAGGCGCggcgggaccauguCGCUGCGCgGcCAg -3'
miRNA:   3'- gaCCUCUUCGCG-------------GCGAUGCGgCaGUa -5'
13975 5' -57.8 NC_003521.1 + 22171 0.68 0.822431
Target:  5'- gUGGAGAgggacgaGGCGCCGCcg-GCCGUgGc -3'
miRNA:   3'- gACCUCU-------UCGCGGCGaugCGGCAgUa -5'
13975 5' -57.8 NC_003521.1 + 23549 0.66 0.902813
Target:  5'- gUGGuGGccAGCGCCuGCUccuCGuCCGUCAUg -3'
miRNA:   3'- gACCuCU--UCGCGG-CGAu--GC-GGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 27742 0.74 0.509404
Target:  5'- -aGGAGAacgAGCGCCGCgAUGUCGUCc- -3'
miRNA:   3'- gaCCUCU---UCGCGGCGaUGCGGCAGua -5'
13975 5' -57.8 NC_003521.1 + 29688 0.66 0.890167
Target:  5'- aCUGGAGGAuGauCCGCUGCGUCcUCGg -3'
miRNA:   3'- -GACCUCUU-CgcGGCGAUGCGGcAGUa -5'
13975 5' -57.8 NC_003521.1 + 35350 0.67 0.837845
Target:  5'- -aGGAGGAGUGCCGUcgucgaggaacgACGCCGa--- -3'
miRNA:   3'- gaCCUCUUCGCGGCGa-----------UGCGGCagua -5'
13975 5' -57.8 NC_003521.1 + 35789 0.69 0.760986
Target:  5'- -cGGAcGAaacggauccaucgGGCGUCGCggcACGCCGUCGUu -3'
miRNA:   3'- gaCCU-CU-------------UCGCGGCGa--UGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 39001 0.7 0.69528
Target:  5'- gCUGGuGGAuguGGCGCUGC-ACGgCCGUCAg -3'
miRNA:   3'- -GACC-UCU---UCGCGGCGaUGC-GGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 45275 0.74 0.490724
Target:  5'- cCUGGAGAucauggaccgGGCGCCGCUGgGCCa---- -3'
miRNA:   3'- -GACCUCU----------UCGCGGCGAUgCGGcagua -5'
13975 5' -57.8 NC_003521.1 + 49665 0.78 0.303757
Target:  5'- uCUGGAGAGGgGCCgggcgagcgcggcGCUGuCGCCGUCAg -3'
miRNA:   3'- -GACCUCUUCgCGG-------------CGAU-GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 49815 0.71 0.675673
Target:  5'- aUGGcuGGGCGCCGUgcagUGCGCCGUgCAg -3'
miRNA:   3'- gACCucUUCGCGGCG----AUGCGGCA-GUa -5'
13975 5' -57.8 NC_003521.1 + 54158 0.68 0.823257
Target:  5'- uUGGAGAGGcCGCCGCcucCGCCa---- -3'
miRNA:   3'- gACCUCUUC-GCGGCGau-GCGGcagua -5'
13975 5' -57.8 NC_003521.1 + 55464 0.68 0.814921
Target:  5'- gCUGGaAGAGgcacuGCGCCGCcuUGCCGUCc- -3'
miRNA:   3'- -GACC-UCUU-----CGCGGCGauGCGGCAGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.