miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 5' -57.8 NC_003521.1 + 54158 0.68 0.823257
Target:  5'- uUGGAGAGGcCGCCGCcucCGCCa---- -3'
miRNA:   3'- gACCUCUUC-GCGGCGau-GCGGcagua -5'
13975 5' -57.8 NC_003521.1 + 163949 0.69 0.771061
Target:  5'- -aGGAGGAGUcucgGCCGCggACGCCGa--- -3'
miRNA:   3'- gaCCUCUUCG----CGGCGa-UGCGGCagua -5'
13975 5' -57.8 NC_003521.1 + 112193 0.69 0.780098
Target:  5'- uCUGGAGggGCGCguguccgaaGCggagGCGCUGcUCAa -3'
miRNA:   3'- -GACCUCuuCGCGg--------CGa---UGCGGC-AGUa -5'
13975 5' -57.8 NC_003521.1 + 75980 0.69 0.78901
Target:  5'- --cGAGGAGCGgcccUCGCcggGCGCCGUCAg -3'
miRNA:   3'- gacCUCUUCGC----GGCGa--UGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 78680 0.68 0.797791
Target:  5'- -aGGGGAAGcCGCCGuCUGCGC--UCAUg -3'
miRNA:   3'- gaCCUCUUC-GCGGC-GAUGCGgcAGUA- -5'
13975 5' -57.8 NC_003521.1 + 153243 0.68 0.797791
Target:  5'- aUGGAcuucuuGGCGUCGCUAcCGCgGUCGUg -3'
miRNA:   3'- gACCUcu----UCGCGGCGAU-GCGgCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 233726 0.68 0.797791
Target:  5'- cCUGGAGAAGgaggaCGCCGC--CGCCG-CGUc -3'
miRNA:   3'- -GACCUCUUC-----GCGGCGauGCGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 55464 0.68 0.814921
Target:  5'- gCUGGaAGAGgcacuGCGCCGCcuUGCCGUCc- -3'
miRNA:   3'- -GACC-UCUU-----CGCGGCGauGCGGCAGua -5'
13975 5' -57.8 NC_003521.1 + 6386 0.68 0.814921
Target:  5'- -cGGAGggGCGCCGCaGCuaCCG-CGg -3'
miRNA:   3'- gaCCUCuuCGCGGCGaUGc-GGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 35789 0.69 0.760986
Target:  5'- -cGGAcGAaacggauccaucgGGCGUCGCggcACGCCGUCGUu -3'
miRNA:   3'- gaCCU-CU-------------UCGCGGCGa--UGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 172770 0.7 0.733833
Target:  5'- uCUGGcugccaccGGggGCGCCGCggaccACGCCGccCGUg -3'
miRNA:   3'- -GACC--------UCuuCGCGGCGa----UGCGGCa-GUA- -5'
13975 5' -57.8 NC_003521.1 + 61839 0.7 0.714689
Target:  5'- cCUGGGaGGGCGCCGCggaaccgcgGCGCCuGUCc- -3'
miRNA:   3'- -GACCUcUUCGCGGCGa--------UGCGG-CAGua -5'
13975 5' -57.8 NC_003521.1 + 134207 0.75 0.454366
Target:  5'- -cGGAGAAGCgcugguGCCGCUugGCCGa--- -3'
miRNA:   3'- gaCCUCUUCG------CGGCGAugCGGCagua -5'
13975 5' -57.8 NC_003521.1 + 168932 0.74 0.490724
Target:  5'- -aGGAGGgcgcaggcagGGcCGCCGCUGuCGCCGUCGc -3'
miRNA:   3'- gaCCUCU----------UC-GCGGCGAU-GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 45275 0.74 0.490724
Target:  5'- cCUGGAGAucauggaccgGGCGCCGCUGgGCCa---- -3'
miRNA:   3'- -GACCUCU----------UCGCGGCGAUgCGGcagua -5'
13975 5' -57.8 NC_003521.1 + 27742 0.74 0.509404
Target:  5'- -aGGAGAacgAGCGCCGCgAUGUCGUCc- -3'
miRNA:   3'- gaCCUCU---UCGCGGCGaUGCGGCAGua -5'
13975 5' -57.8 NC_003521.1 + 133935 0.73 0.567046
Target:  5'- cCUGGuGGcgcuGCGCCGCUACuaCCGUCAc -3'
miRNA:   3'- -GACCuCUu---CGCGGCGAUGc-GGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 1483 0.72 0.596516
Target:  5'- aUGGGGAA-CGCCGCUACaCCGcCAUg -3'
miRNA:   3'- gACCUCUUcGCGGCGAUGcGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 239229 0.7 0.69528
Target:  5'- gCUGGuGGAuguGGCGCUGC-ACGgCCGUCAg -3'
miRNA:   3'- -GACC-UCU---UCGCGGCGaUGC-GGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 153906 0.7 0.707923
Target:  5'- -aGGGGAacAGCGCCGCgugcagcuuccacUccucggccacccgccGCGCCGUCAUg -3'
miRNA:   3'- gaCCUCU--UCGCGGCG-------------A---------------UGCGGCAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.