Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13975 | 5' | -57.8 | NC_003521.1 | + | 207706 | 0.87 | 0.079143 |
Target: 5'- gCUGGAGAAgGC-CCGCUACGCCGUCAUc -3' miRNA: 3'- -GACCUCUU-CGcGGCGAUGCGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 167596 | 0.7 | 0.705014 |
Target: 5'- aUGGAGAgcggcgcgcagaGGCGCCGCagGCGCUcgggGUCGg -3' miRNA: 3'- gACCUCU------------UCGCGGCGa-UGCGG----CAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 218224 | 0.7 | 0.733833 |
Target: 5'- -cGGAGGucaGGCGaCCGCagGgGCCGUCAc -3' miRNA: 3'- gaCCUCU---UCGC-GGCGa-UgCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 204743 | 0.66 | 0.914583 |
Target: 5'- gUGGugauGGAGGCGCCGC--CGCCGcCc- -3' miRNA: 3'- gACC----UCUUCGCGGCGauGCGGCaGua -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 157049 | 0.77 | 0.354938 |
Target: 5'- -cGGAGGAGCGCgGCgggggGCGCCGcCAc -3' miRNA: 3'- gaCCUCUUCGCGgCGa----UGCGGCaGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 140794 | 0.76 | 0.378319 |
Target: 5'- gCUGGAcGAGcCGCUGCUGCGUCGUCu- -3' miRNA: 3'- -GACCUcUUC-GCGGCGAUGCGGCAGua -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 185100 | 0.75 | 0.445505 |
Target: 5'- gCUGG-GAGGCGCUGC-GCGCCGaCAUg -3' miRNA: 3'- -GACCuCUUCGCGGCGaUGCGGCaGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 200317 | 0.73 | 0.528376 |
Target: 5'- gCUGGAGGAguucgagauGCGCUGCgGCGCCGUgGc -3' miRNA: 3'- -GACCUCUU---------CGCGGCGaUGCGGCAgUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 223342 | 0.71 | 0.655932 |
Target: 5'- -cGGc--GGCGCCGCUACcgguGCCGUCGUc -3' miRNA: 3'- gaCCucuUCGCGGCGAUG----CGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 165175 | 0.7 | 0.705014 |
Target: 5'- aUGGuGGGAcuGCGCCGCUGuugcCGUCGUCAUc -3' miRNA: 3'- gACC-UCUU--CGCGGCGAU----GCGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 212816 | 0.7 | 0.685497 |
Target: 5'- gCUGGAGGaggacagcgaGGUGCCGCUcACGCUGcCGc -3' miRNA: 3'- -GACCUCU----------UCGCGGCGA-UGCGGCaGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 183318 | 0.71 | 0.646031 |
Target: 5'- -cGuGAucAGCGCCGUgcGCGCCGUCAUg -3' miRNA: 3'- gaC-CUcuUCGCGGCGa-UGCGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 49665 | 0.78 | 0.303757 |
Target: 5'- uCUGGAGAGGgGCCgggcgagcgcggcGCUGuCGCCGUCAg -3' miRNA: 3'- -GACCUCUUCgCGG-------------CGAU-GCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 39001 | 0.7 | 0.69528 |
Target: 5'- gCUGGuGGAuguGGCGCUGC-ACGgCCGUCAg -3' miRNA: 3'- -GACC-UCU---UCGCGGCGaUGC-GGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 116914 | 0.78 | 0.304437 |
Target: 5'- gUGGAGAacAGCGCCGC-GCGCCGaCAg -3' miRNA: 3'- gACCUCU--UCGCGGCGaUGCGGCaGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 82850 | 0.71 | 0.646031 |
Target: 5'- -gGGcGGcGGCGUCGCUaccaGCGCCGUCGUc -3' miRNA: 3'- gaCC-UCuUCGCGGCGA----UGCGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 172459 | 0.7 | 0.69528 |
Target: 5'- -aGGGGAGGCaggGCCgGCagcggUGCGCCGUCGg -3' miRNA: 3'- gaCCUCUUCG---CGG-CG-----AUGCGGCAGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 90254 | 0.7 | 0.714689 |
Target: 5'- -aGGAGccGCGCCGCcgcCGCCGcCAc -3' miRNA: 3'- gaCCUCuuCGCGGCGau-GCGGCaGUa -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 159841 | 0.78 | 0.318282 |
Target: 5'- -aGGAGAAGgGCCGCUGCuacucgcgccccGUCGUCAUg -3' miRNA: 3'- gaCCUCUUCgCGGCGAUG------------CGGCAGUA- -5' |
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13975 | 5' | -57.8 | NC_003521.1 | + | 183908 | 0.76 | 0.386339 |
Target: 5'- gCUGGAGGcGGUGCUGCgGCGCUGUCGc -3' miRNA: 3'- -GACCUCU-UCGCGGCGaUGCGGCAGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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