miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 5' -57.8 NC_003521.1 + 239229 0.7 0.69528
Target:  5'- gCUGGuGGAuguGGCGCUGC-ACGgCCGUCAg -3'
miRNA:   3'- -GACC-UCU---UCGCGGCGaUGC-GGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 233726 0.68 0.797791
Target:  5'- cCUGGAGAAGgaggaCGCCGC--CGCCG-CGUc -3'
miRNA:   3'- -GACCUCUUC-----GCGGCGauGCGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 223942 0.66 0.896598
Target:  5'- -aGGGGGucgaGGCgGCCGCggggaACGCaCGUCGUa -3'
miRNA:   3'- gaCCUCU----UCG-CGGCGa----UGCG-GCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 223342 0.71 0.655932
Target:  5'- -cGGc--GGCGCCGCUACcgguGCCGUCGUc -3'
miRNA:   3'- gaCCucuUCGCGGCGAUG----CGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 220944 0.67 0.847257
Target:  5'- -aGGAucAGCGCCGacGCGgCCGUCAg -3'
miRNA:   3'- gaCCUcuUCGCGGCgaUGC-GGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 218224 0.7 0.733833
Target:  5'- -cGGAGGucaGGCGaCCGCagGgGCCGUCAc -3'
miRNA:   3'- gaCCUCU---UCGC-GGCGa-UgCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 213719 0.66 0.908219
Target:  5'- -cGGGGAugcccagccagacGGCGCCGCagaAgGCCGUgGUg -3'
miRNA:   3'- gaCCUCU-------------UCGCGGCGa--UgCGGCAgUA- -5'
13975 5' -57.8 NC_003521.1 + 212816 0.7 0.685497
Target:  5'- gCUGGAGGaggacagcgaGGUGCCGCUcACGCUGcCGc -3'
miRNA:   3'- -GACCUCU----------UCGCGGCGA-UGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 212727 0.68 0.814921
Target:  5'- uUGGGcGAGCGCCuGCUcggcuucccCGCCGUCGUc -3'
miRNA:   3'- gACCUcUUCGCGG-CGAu--------GCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 209153 0.69 0.78901
Target:  5'- cCUGGAGAA-CGCCgaGCUGCGCCu---- -3'
miRNA:   3'- -GACCUCUUcGCGG--CGAUGCGGcagua -5'
13975 5' -57.8 NC_003521.1 + 207706 0.87 0.079143
Target:  5'- gCUGGAGAAgGC-CCGCUACGCCGUCAUc -3'
miRNA:   3'- -GACCUCUU-CGcGGCGAUGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 206606 0.66 0.890167
Target:  5'- -cGGcGAcacgGGCGCCGuCUACGCCGcCc- -3'
miRNA:   3'- gaCCuCU----UCGCGGC-GAUGCGGCaGua -5'
13975 5' -57.8 NC_003521.1 + 204743 0.66 0.914583
Target:  5'- gUGGugauGGAGGCGCCGC--CGCCGcCc- -3'
miRNA:   3'- gACC----UCUUCGCGGCGauGCGGCaGua -5'
13975 5' -57.8 NC_003521.1 + 200462 0.67 0.862353
Target:  5'- gUGGAGAAG-GCCcuGCgcaGCGCCGUgAUc -3'
miRNA:   3'- gACCUCUUCgCGG--CGa--UGCGGCAgUA- -5'
13975 5' -57.8 NC_003521.1 + 200317 0.73 0.528376
Target:  5'- gCUGGAGGAguucgagauGCGCUGCgGCGCCGUgGc -3'
miRNA:   3'- -GACCUCUU---------CGCGGCGaUGCGGCAgUa -5'
13975 5' -57.8 NC_003521.1 + 193155 0.66 0.890167
Target:  5'- aUGGcGGggGCGuCUGCUGCuGCUGUUg- -3'
miRNA:   3'- gACC-UCuuCGC-GGCGAUG-CGGCAGua -5'
13975 5' -57.8 NC_003521.1 + 190554 0.68 0.823257
Target:  5'- --cGuGAAGCGCCGCUcguacuCGCCGUaCAUc -3'
miRNA:   3'- gacCuCUUCGCGGCGAu-----GCGGCA-GUA- -5'
13975 5' -57.8 NC_003521.1 + 185100 0.75 0.445505
Target:  5'- gCUGG-GAGGCGCUGC-GCGCCGaCAUg -3'
miRNA:   3'- -GACCuCUUCGCGGCGaUGCGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 183908 0.76 0.386339
Target:  5'- gCUGGAGGcGGUGCUGCgGCGCUGUCGc -3'
miRNA:   3'- -GACCUCU-UCGCGGCGaUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 183318 0.71 0.646031
Target:  5'- -cGuGAucAGCGCCGUgcGCGCCGUCAUg -3'
miRNA:   3'- gaC-CUcuUCGCGGCGa-UGCGGCAGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.