miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 5' -57.8 NC_003521.1 + 170096 0.66 0.889512
Target:  5'- gCUGGAcGAAGUGCCGgUacauccggcgcagGCGCCGacgCAg -3'
miRNA:   3'- -GACCU-CUUCGCGGCgA-------------UGCGGCa--GUa -5'
13975 5' -57.8 NC_003521.1 + 18921 0.66 0.883522
Target:  5'- -aGGGu-GGCGCCGC-GCGCCGgCAa -3'
miRNA:   3'- gaCCUcuUCGCGGCGaUGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 115067 0.67 0.876669
Target:  5'- -cGGAGAAGCccgacgucGCCcagaaacccuGCUccuGCGCCGUCGc -3'
miRNA:   3'- gaCCUCUUCG--------CGG----------CGA---UGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 143173 0.67 0.876669
Target:  5'- gUGGGGGucggacccGGCGCCGCcGCGaaCGUCGa -3'
miRNA:   3'- gACCUCU--------UCGCGGCGaUGCg-GCAGUa -5'
13975 5' -57.8 NC_003521.1 + 123590 0.67 0.869611
Target:  5'- -cGGcgccGGGAGcCGCCGCg--GCCGUCAg -3'
miRNA:   3'- gaCC----UCUUC-GCGGCGaugCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 59409 0.67 0.869611
Target:  5'- cCUGGAGAAGUucgugGCaCGCgacagcgGCGCCGcCGc -3'
miRNA:   3'- -GACCUCUUCG-----CG-GCGa------UGCGGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 109566 0.67 0.868894
Target:  5'- -cGGuGAaaucaaaAGCGCCGCUcccgucggcauCGCCGUCGc -3'
miRNA:   3'- gaCCuCU-------UCGCGGCGAu----------GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 129426 0.67 0.862353
Target:  5'- aUGGGGGAGcCGCUGCaGCGCguccccucCGUCGc -3'
miRNA:   3'- gACCUCUUC-GCGGCGaUGCG--------GCAGUa -5'
13975 5' -57.8 NC_003521.1 + 200462 0.67 0.862353
Target:  5'- gUGGAGAAG-GCCcuGCgcaGCGCCGUgAUc -3'
miRNA:   3'- gACCUCUUCgCGG--CGa--UGCGGCAgUA- -5'
13975 5' -57.8 NC_003521.1 + 67284 0.67 0.862353
Target:  5'- -gGGAGGAcaGCCGCUGCGCCu---- -3'
miRNA:   3'- gaCCUCUUcgCGGCGAUGCGGcagua -5'
13975 5' -57.8 NC_003521.1 + 63421 0.67 0.862353
Target:  5'- -cGGGGAAGCggcccGCCGCguauauCGCCGaUCGc -3'
miRNA:   3'- gaCCUCUUCG-----CGGCGau----GCGGC-AGUa -5'
13975 5' -57.8 NC_003521.1 + 103887 0.67 0.8549
Target:  5'- -gGGGGAuGgGCUGCcGCGCgGUCAg -3'
miRNA:   3'- gaCCUCUuCgCGGCGaUGCGgCAGUa -5'
13975 5' -57.8 NC_003521.1 + 8922 0.67 0.8549
Target:  5'- -gGGAGAAGaGCCGCUGcCGCagGUUAc -3'
miRNA:   3'- gaCCUCUUCgCGGCGAU-GCGg-CAGUa -5'
13975 5' -57.8 NC_003521.1 + 77045 0.67 0.8549
Target:  5'- gUGGu--GGCGCCGCUAccguuguugcCGCCGcCGUg -3'
miRNA:   3'- gACCucuUCGCGGCGAU----------GCGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 97605 0.67 0.8549
Target:  5'- uUGGAGcAGGUGCaguGC-ACGUCGUCGUg -3'
miRNA:   3'- gACCUC-UUCGCGg--CGaUGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 65371 0.67 0.8549
Target:  5'- -gGGAGAcggcGCGCCGCcgaucgUACGCCGagCAc -3'
miRNA:   3'- gaCCUCUu---CGCGGCG------AUGCGGCa-GUa -5'
13975 5' -57.8 NC_003521.1 + 167915 0.67 0.8549
Target:  5'- -aGGuGggGCGCCGCgauCGagggguaCGUCAg -3'
miRNA:   3'- gaCCuCuuCGCGGCGau-GCg------GCAGUa -5'
13975 5' -57.8 NC_003521.1 + 142641 0.67 0.852627
Target:  5'- -aGGAGAaccgcggccucagcGGuCGgCGCaGCGCCGUCAg -3'
miRNA:   3'- gaCCUCU--------------UC-GCgGCGaUGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 220944 0.67 0.847257
Target:  5'- -aGGAucAGCGCCGacGCGgCCGUCAg -3'
miRNA:   3'- gaCCUcuUCGCGGCgaUGC-GGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 141624 0.67 0.847257
Target:  5'- -aGGAcu-GCGCCGCg--GCCGUCAc -3'
miRNA:   3'- gaCCUcuuCGCGGCGaugCGGCAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.