miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13975 5' -57.8 NC_003521.1 + 103558 0.67 0.839432
Target:  5'- gCUGGGGcccccgcucuGC-CCGCUGcCGCCGUCGg -3'
miRNA:   3'- -GACCUCuu--------CGcGGCGAU-GCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 78610 0.67 0.839432
Target:  5'- -cGGAGAGGCaCCGaCUGCGCgGcUCGc -3'
miRNA:   3'- gaCCUCUUCGcGGC-GAUGCGgC-AGUa -5'
13975 5' -57.8 NC_003521.1 + 113847 0.67 0.839432
Target:  5'- gCUGGGGuuucuuccGAGCGUgGCggugguguaaGCGCCGUCAc -3'
miRNA:   3'- -GACCUC--------UUCGCGgCGa---------UGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 35350 0.67 0.837845
Target:  5'- -aGGAGGAGUGCCGUcgucgaggaacgACGCCGa--- -3'
miRNA:   3'- gaCCUCUUCGCGGCGa-----------UGCGGCagua -5'
13975 5' -57.8 NC_003521.1 + 71368 0.68 0.823257
Target:  5'- cCUGGcgacGAAcccGcCGCCGCcgACGCCGUCGUc -3'
miRNA:   3'- -GACCu---CUU---C-GCGGCGa-UGCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 54158 0.68 0.823257
Target:  5'- uUGGAGAGGcCGCCGCcucCGCCa---- -3'
miRNA:   3'- gACCUCUUC-GCGGCGau-GCGGcagua -5'
13975 5' -57.8 NC_003521.1 + 142761 0.68 0.823257
Target:  5'- -cGGGGugaccAGCGuCCGCggcgGCGUCGUCGg -3'
miRNA:   3'- gaCCUCu----UCGC-GGCGa---UGCGGCAGUa -5'
13975 5' -57.8 NC_003521.1 + 190554 0.68 0.823257
Target:  5'- --cGuGAAGCGCCGCUcguacuCGCCGUaCAUc -3'
miRNA:   3'- gacCuCUUCGCGGCGAu-----GCGGCA-GUA- -5'
13975 5' -57.8 NC_003521.1 + 109719 0.68 0.823257
Target:  5'- -cGGcAGccGCGCCGCccCGCCGUCc- -3'
miRNA:   3'- gaCC-UCuuCGCGGCGauGCGGCAGua -5'
13975 5' -57.8 NC_003521.1 + 74345 0.68 0.823257
Target:  5'- gCUGGAu-GGCGCUGCUGCGCgGc--- -3'
miRNA:   3'- -GACCUcuUCGCGGCGAUGCGgCagua -5'
13975 5' -57.8 NC_003521.1 + 22171 0.68 0.822431
Target:  5'- gUGGAGAgggacgaGGCGCCGCcg-GCCGUgGc -3'
miRNA:   3'- gACCUCU-------UCGCGGCGaugCGGCAgUa -5'
13975 5' -57.8 NC_003521.1 + 212727 0.68 0.814921
Target:  5'- uUGGGcGAGCGCCuGCUcggcuucccCGCCGUCGUc -3'
miRNA:   3'- gACCUcUUCGCGG-CGAu--------GCGGCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 55464 0.68 0.814921
Target:  5'- gCUGGaAGAGgcacuGCGCCGCcuUGCCGUCc- -3'
miRNA:   3'- -GACC-UCUU-----CGCGGCGauGCGGCAGua -5'
13975 5' -57.8 NC_003521.1 + 6386 0.68 0.814921
Target:  5'- -cGGAGggGCGCCGCaGCuaCCG-CGg -3'
miRNA:   3'- gaCCUCuuCGCGGCGaUGc-GGCaGUa -5'
13975 5' -57.8 NC_003521.1 + 155134 0.68 0.797791
Target:  5'- cCUGGAGAaccugcGGCGCgUGCUggACGCCGgcUCGg -3'
miRNA:   3'- -GACCUCU------UCGCG-GCGA--UGCGGC--AGUa -5'
13975 5' -57.8 NC_003521.1 + 78680 0.68 0.797791
Target:  5'- -aGGGGAAGcCGCCGuCUGCGC--UCAUg -3'
miRNA:   3'- gaCCUCUUC-GCGGC-GAUGCGgcAGUA- -5'
13975 5' -57.8 NC_003521.1 + 153243 0.68 0.797791
Target:  5'- aUGGAcuucuuGGCGUCGCUAcCGCgGUCGUg -3'
miRNA:   3'- gACCUcu----UCGCGGCGAU-GCGgCAGUA- -5'
13975 5' -57.8 NC_003521.1 + 233726 0.68 0.797791
Target:  5'- cCUGGAGAAGgaggaCGCCGC--CGCCG-CGUc -3'
miRNA:   3'- -GACCUCUUC-----GCGGCGauGCGGCaGUA- -5'
13975 5' -57.8 NC_003521.1 + 209153 0.69 0.78901
Target:  5'- cCUGGAGAA-CGCCgaGCUGCGCCu---- -3'
miRNA:   3'- -GACCUCUUcGCGG--CGAUGCGGcagua -5'
13975 5' -57.8 NC_003521.1 + 175833 0.69 0.78901
Target:  5'- -cGGuccaAGAAGCGgCGC-ACGUCGUCGUg -3'
miRNA:   3'- gaCC----UCUUCGCgGCGaUGCGGCAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.