miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13976 5' -61.1 NC_003521.1 + 76969 0.7 0.532407
Target:  5'- gCGGCCga-UGCGCGUGaUGCUGGCg-- -3'
miRNA:   3'- -GCCGGacgACGCGCAC-ACGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 80141 0.69 0.589701
Target:  5'- gCGGCCggUGCUGCGCGUccaGCC-GCUgGa -3'
miRNA:   3'- -GCCGG--ACGACGCGCAca-CGGuCGAgU- -5'
13976 5' -61.1 NC_003521.1 + 85374 0.72 0.450723
Target:  5'- aCGGgCUGCUGCgacucgcccaGCGggucgGCCAGCUCGc -3'
miRNA:   3'- -GCCgGACGACG----------CGCaca--CGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 91699 0.67 0.705827
Target:  5'- gGGCgUGCUGCG-GUcugcGUGCC-GCUCc -3'
miRNA:   3'- gCCGgACGACGCgCA----CACGGuCGAGu -5'
13976 5' -61.1 NC_003521.1 + 98820 0.68 0.63728
Target:  5'- aGGCguugcagCUGCUugGCGCGg--GCCAGCUCc -3'
miRNA:   3'- gCCG-------GACGA--CGCGCacaCGGUCGAGu -5'
13976 5' -61.1 NC_003521.1 + 102773 0.71 0.480829
Target:  5'- gCGGCagcgGCUGCGCGaUGacgcgccggcggccGCCAGCUCGg -3'
miRNA:   3'- -GCCGga--CGACGCGC-ACa-------------CGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 105629 0.73 0.384244
Target:  5'- gGGCgUGCUcGgGCGUGUGCgugaagccCAGCUCGg -3'
miRNA:   3'- gCCGgACGA-CgCGCACACG--------GUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 105913 0.66 0.744292
Target:  5'- aGGCCgcgucgaaguagacgGuCUGCGUGUG-GCCGGCg-- -3'
miRNA:   3'- gCCGGa--------------C-GACGCGCACaCGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 109572 0.77 0.226669
Target:  5'- uCGGCUaGCaUGCGCGUGaagugcGCCAGCUCGg -3'
miRNA:   3'- -GCCGGaCG-ACGCGCACa-----CGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 110200 0.67 0.715317
Target:  5'- aGGCCgcugGCgUGCGCGUGUuuguacuuGCCguAGCUg- -3'
miRNA:   3'- gCCGGa---CG-ACGCGCACA--------CGG--UCGAgu -5'
13976 5' -61.1 NC_003521.1 + 110821 0.67 0.715317
Target:  5'- gCGGCC-GUUGCGCGccgccGCCGGCgCAg -3'
miRNA:   3'- -GCCGGaCGACGCGCaca--CGGUCGaGU- -5'
13976 5' -61.1 NC_003521.1 + 113122 0.66 0.788259
Target:  5'- gGGCCaGgUGCGCGacgaUGUGCUcucGCUCu -3'
miRNA:   3'- gCCGGaCgACGCGC----ACACGGu--CGAGu -5'
13976 5' -61.1 NC_003521.1 + 116935 0.66 0.761644
Target:  5'- aCGGCCUGCUGggcaacaGCGUGga-CGcGCUCu -3'
miRNA:   3'- -GCCGGACGACg------CGCACacgGU-CGAGu -5'
13976 5' -61.1 NC_003521.1 + 120579 0.66 0.743369
Target:  5'- aGGCgaUGCacgGCGCGgccGCCGGCUCc -3'
miRNA:   3'- gCCGg-ACGa--CGCGCacaCGGUCGAGu -5'
13976 5' -61.1 NC_003521.1 + 120760 0.66 0.740596
Target:  5'- aCGGaCCUGaacgucaaggggcaCUGCGCG-GUGggcgagcgcgaCCAGCUCAa -3'
miRNA:   3'- -GCC-GGAC--------------GACGCGCaCAC-----------GGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 122221 0.73 0.368668
Target:  5'- -uGCCUGCgaGCGCGgGUGCCGGCg-- -3'
miRNA:   3'- gcCGGACGa-CGCGCaCACGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 126781 0.77 0.211358
Target:  5'- aGGCCcuggcGCUGCGCGUG-GuCCAGCUCc -3'
miRNA:   3'- gCCGGa----CGACGCGCACaC-GGUCGAGu -5'
13976 5' -61.1 NC_003521.1 + 126875 0.71 0.458593
Target:  5'- aGGCCUGCgucagugagacgUGCGCGUccGUGgcgauguccuccaCCAGCUCGc -3'
miRNA:   3'- gCCGGACG------------ACGCGCA--CAC-------------GGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 129918 0.67 0.734096
Target:  5'- gCGcGCCUGCUGCGCGaacaccUGgccgagacgGCgCAGUUCu -3'
miRNA:   3'- -GC-CGGACGACGCGC------ACa--------CG-GUCGAGu -5'
13976 5' -61.1 NC_003521.1 + 130072 0.67 0.723803
Target:  5'- gCGGCCUGCUcuCGCuggccgaGUGgaacUGCCAGCUg- -3'
miRNA:   3'- -GCCGGACGAc-GCG-------CAC----ACGGUCGAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.