miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13976 5' -61.1 NC_003521.1 + 367 0.69 0.579086
Target:  5'- gCGGCgUGCUGUggaacgaaggugaGUGUGUGCUGGCgcgCGg -3'
miRNA:   3'- -GCCGgACGACG-------------CGCACACGGUCGa--GU- -5'
13976 5' -61.1 NC_003521.1 + 1441 0.66 0.788259
Target:  5'- gGGCCgcgaGCUGCGCcgccgGUGgCAGCa-- -3'
miRNA:   3'- gCCGGa---CGACGCGca---CACgGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 13981 0.68 0.667384
Target:  5'- gGGCCUGCccgGCGCGgcgGCgGGCg-- -3'
miRNA:   3'- gCCGGACGa--CGCGCacaCGgUCGagu -5'
13976 5' -61.1 NC_003521.1 + 17968 0.66 0.788259
Target:  5'- aCGGCCUGCUGUGgugcgaguaCGUGUaucGCCAcccGCa-- -3'
miRNA:   3'- -GCCGGACGACGC---------GCACA---CGGU---CGagu -5'
13976 5' -61.1 NC_003521.1 + 18430 0.73 0.361045
Target:  5'- gCGGCCUGCUcaagacGCGCGgccUGUGCC-GCUUc -3'
miRNA:   3'- -GCCGGACGA------CGCGC---ACACGGuCGAGu -5'
13976 5' -61.1 NC_003521.1 + 19665 0.66 0.761644
Target:  5'- gGGgCUGCUGCGC-UGgGCCgAGCcCAa -3'
miRNA:   3'- gCCgGACGACGCGcACaCGG-UCGaGU- -5'
13976 5' -61.1 NC_003521.1 + 21294 0.69 0.579086
Target:  5'- gCGGUCUgGCUGCGCGUGgcgGucaucgucaacuuCCAGCUg- -3'
miRNA:   3'- -GCCGGA-CGACGCGCACa--C-------------GGUCGAgu -5'
13976 5' -61.1 NC_003521.1 + 22356 0.68 0.65769
Target:  5'- gGGCCacUGCgcccacgGCGUG-GUGCCGGC-CAu -3'
miRNA:   3'- gCCGG--ACGa------CGCGCaCACGGUCGaGU- -5'
13976 5' -61.1 NC_003521.1 + 22415 0.67 0.715317
Target:  5'- uGGCCaUGCUGCGCGgcgugGCCgAGUa-- -3'
miRNA:   3'- gCCGG-ACGACGCGCaca--CGG-UCGagu -5'
13976 5' -61.1 NC_003521.1 + 24282 0.7 0.541836
Target:  5'- uGGCC-GCUGCaC-UGUGCUGGCUCGa -3'
miRNA:   3'- gCCGGaCGACGcGcACACGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 29422 0.69 0.608111
Target:  5'- gGGCCccggugacaGCUacaaccaGCGCGUGgGCCAGUUCAu -3'
miRNA:   3'- gCCGGa--------CGA-------CGCGCACaCGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 33935 0.68 0.638253
Target:  5'- uGGUgCUGCUGUGCGgcGUGCgCGGCgagCAg -3'
miRNA:   3'- gCCG-GACGACGCGCa-CACG-GUCGa--GU- -5'
13976 5' -61.1 NC_003521.1 + 40689 0.69 0.579086
Target:  5'- gCGGCgUGCUGUggaacgaaggugaGUGUGUGCUGGCgcgCGg -3'
miRNA:   3'- -GCCGgACGACG-------------CGCACACGGUCGa--GU- -5'
13976 5' -61.1 NC_003521.1 + 42572 0.69 0.59938
Target:  5'- aCGGCUaucGCUGCgGCGUcaGCCAGCUa- -3'
miRNA:   3'- -GCCGGa--CGACG-CGCAcaCGGUCGAgu -5'
13976 5' -61.1 NC_003521.1 + 53194 0.68 0.667384
Target:  5'- uGGCCaGCgGCGCGcG-GcCCGGCUCGc -3'
miRNA:   3'- gCCGGaCGaCGCGCaCaC-GGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 73014 0.66 0.77063
Target:  5'- uGGCUgacaUGCGCGgugGUGCUGGCUg- -3'
miRNA:   3'- gCCGGacg-ACGCGCa--CACGGUCGAgu -5'
13976 5' -61.1 NC_003521.1 + 73167 0.68 0.65769
Target:  5'- uCGGCCUGCgaccugGaCGCGgagcugGCCGGCaUCGa -3'
miRNA:   3'- -GCCGGACGa-----C-GCGCaca---CGGUCG-AGU- -5'
13976 5' -61.1 NC_003521.1 + 73968 0.67 0.696282
Target:  5'- uGuGCCUGCUGUGCGagcucaUGU-CCuGCUCGu -3'
miRNA:   3'- gC-CGGACGACGCGC------ACAcGGuCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 74351 0.73 0.392194
Target:  5'- uGGCgCUGCUGCGCGgcuacgGCCAGUgCGg -3'
miRNA:   3'- gCCG-GACGACGCGCaca---CGGUCGaGU- -5'
13976 5' -61.1 NC_003521.1 + 74887 0.73 0.353531
Target:  5'- aCGGCgCUGCUGCGCGagacgGUGgCGGCg-- -3'
miRNA:   3'- -GCCG-GACGACGCGCa----CACgGUCGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.