miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13976 5' -61.1 NC_003521.1 + 91699 0.67 0.705827
Target:  5'- gGGCgUGCUGCG-GUcugcGUGCC-GCUCc -3'
miRNA:   3'- gCCGgACGACGCgCA----CACGGuCGAGu -5'
13976 5' -61.1 NC_003521.1 + 29422 0.69 0.608111
Target:  5'- gGGCCccggugacaGCUacaaccaGCGCGUGgGCCAGUUCAu -3'
miRNA:   3'- gCCGGa--------CGA-------CGCGCACaCGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 148937 0.69 0.609082
Target:  5'- aGcGCCgUGCUGgCGCGUGUGCU-GCUgGa -3'
miRNA:   3'- gC-CGG-ACGAC-GCGCACACGGuCGAgU- -5'
13976 5' -61.1 NC_003521.1 + 232918 0.69 0.618798
Target:  5'- uGGaCCUGCUG-GUGUGUGUCuuucuacuAGCUCu -3'
miRNA:   3'- gCC-GGACGACgCGCACACGG--------UCGAGu -5'
13976 5' -61.1 NC_003521.1 + 193265 0.68 0.647977
Target:  5'- aCGGUCgGCUGCggaGCGgGUGCCGGgaCGg -3'
miRNA:   3'- -GCCGGaCGACG---CGCaCACGGUCgaGU- -5'
13976 5' -61.1 NC_003521.1 + 73167 0.68 0.65769
Target:  5'- uCGGCCUGCgaccugGaCGCGgagcugGCCGGCaUCGa -3'
miRNA:   3'- -GCCGGACGa-----C-GCGCaca---CGGUCG-AGU- -5'
13976 5' -61.1 NC_003521.1 + 53194 0.68 0.667384
Target:  5'- uGGCCaGCgGCGCGcG-GcCCGGCUCGc -3'
miRNA:   3'- gCCGGaCGaCGCGCaCaC-GGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 136773 0.68 0.677052
Target:  5'- uGGCCUacCUGCGCGacaGCgGGCUCAc -3'
miRNA:   3'- gCCGGAc-GACGCGCacaCGgUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 73968 0.67 0.696282
Target:  5'- uGuGCCUGCUGUGCGagcucaUGU-CCuGCUCGu -3'
miRNA:   3'- gC-CGGACGACGCGC------ACAcGGuCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 80141 0.69 0.589701
Target:  5'- gCGGCCggUGCUGCGCGUccaGCC-GCUgGa -3'
miRNA:   3'- -GCCGG--ACGACGCGCAca-CGGuCGAgU- -5'
13976 5' -61.1 NC_003521.1 + 168609 0.69 0.589701
Target:  5'- uGGgCUGCUGgGCGUGcGCCAucuGCUg- -3'
miRNA:   3'- gCCgGACGACgCGCACaCGGU---CGAgu -5'
13976 5' -61.1 NC_003521.1 + 367 0.69 0.579086
Target:  5'- gCGGCgUGCUGUggaacgaaggugaGUGUGUGCUGGCgcgCGg -3'
miRNA:   3'- -GCCGgACGACG-------------CGCACACGGUCGa--GU- -5'
13976 5' -61.1 NC_003521.1 + 109572 0.77 0.226669
Target:  5'- uCGGCUaGCaUGCGCGUGaagugcGCCAGCUCGg -3'
miRNA:   3'- -GCCGGaCG-ACGCGCACa-----CGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 122221 0.73 0.368668
Target:  5'- -uGCCUGCgaGCGCGgGUGCCGGCg-- -3'
miRNA:   3'- gcCGGACGa-CGCGCaCACGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 105629 0.73 0.384244
Target:  5'- gGGCgUGCUcGgGCGUGUGCgugaagccCAGCUCGg -3'
miRNA:   3'- gCCGgACGA-CgCGCACACG--------GUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 126875 0.71 0.458593
Target:  5'- aGGCCUGCgucagugagacgUGCGCGUccGUGgcgauguccuccaCCAGCUCGc -3'
miRNA:   3'- gCCGGACG------------ACGCGCA--CAC-------------GGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 102773 0.71 0.480829
Target:  5'- gCGGCagcgGCUGCGCGaUGacgcgccggcggccGCCAGCUCGg -3'
miRNA:   3'- -GCCGga--CGACGCGC-ACa-------------CGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 215963 0.71 0.504496
Target:  5'- aGGaCCUGCUGCGagagGUG-GCCGGCg-- -3'
miRNA:   3'- gCC-GGACGACGCg---CACaCGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 76969 0.7 0.532407
Target:  5'- gCGGCCga-UGCGCGUGaUGCUGGCg-- -3'
miRNA:   3'- -GCCGGacgACGCGCAC-ACGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 145427 0.7 0.55132
Target:  5'- gGGCUUGCUGgGCGccucgguggaccUGUGCUucggcguGCUCAa -3'
miRNA:   3'- gCCGGACGACgCGC------------ACACGGu------CGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.