miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13976 5' -61.1 NC_003521.1 + 176488 0.66 0.752555
Target:  5'- gGGCCUGCagcuggcucaucUGCuCGUGUaccaugGCCAGCgUCGu -3'
miRNA:   3'- gCCGGACG------------ACGcGCACA------CGGUCG-AGU- -5'
13976 5' -61.1 NC_003521.1 + 113122 0.66 0.788259
Target:  5'- gGGCCaGgUGCGCGacgaUGUGCUcucGCUCu -3'
miRNA:   3'- gCCGGaCgACGCGC----ACACGGu--CGAGu -5'
13976 5' -61.1 NC_003521.1 + 201668 0.66 0.788259
Target:  5'- gGGCCgcgaGCUGCGCcgccgGUGgCAGCa-- -3'
miRNA:   3'- gCCGGa---CGACGCGca---CACgGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 120760 0.66 0.740596
Target:  5'- aCGGaCCUGaacgucaaggggcaCUGCGCG-GUGggcgagcgcgaCCAGCUCAa -3'
miRNA:   3'- -GCC-GGAC--------------GACGCGCaCAC-----------GGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 73014 0.66 0.77063
Target:  5'- uGGCUgacaUGCGCGgugGUGCUGGCUg- -3'
miRNA:   3'- gCCGGacg-ACGCGCa--CACGGUCGAgu -5'
13976 5' -61.1 NC_003521.1 + 1441 0.66 0.788259
Target:  5'- gGGCCgcgaGCUGCGCcgccgGUGgCAGCa-- -3'
miRNA:   3'- gCCGGa---CGACGCGca---CACgGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 19665 0.66 0.761644
Target:  5'- gGGgCUGCUGCGC-UGgGCCgAGCcCAa -3'
miRNA:   3'- gCCgGACGACGCGcACaCGG-UCGaGU- -5'
13976 5' -61.1 NC_003521.1 + 212809 0.66 0.761644
Target:  5'- gCGGCgUGCUGgaggaggacaGCGagGUGCC-GCUCAc -3'
miRNA:   3'- -GCCGgACGACg---------CGCa-CACGGuCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 17968 0.66 0.788259
Target:  5'- aCGGCCUGCUGUGgugcgaguaCGUGUaucGCCAcccGCa-- -3'
miRNA:   3'- -GCCGGACGACGC---------GCACA---CGGU---CGagu -5'
13976 5' -61.1 NC_003521.1 + 131480 0.66 0.779504
Target:  5'- uCGGCCUcCUGCGCcggcUGcUGCCGcCUCAa -3'
miRNA:   3'- -GCCGGAcGACGCGc---AC-ACGGUcGAGU- -5'
13976 5' -61.1 NC_003521.1 + 130516 0.66 0.774193
Target:  5'- uGGCCcugcgGCUGCccgagcagacCGUGUGCCAccugagcgccuucguGCUCAg -3'
miRNA:   3'- gCCGGa----CGACGc---------GCACACGGU---------------CGAGU- -5'
13976 5' -61.1 NC_003521.1 + 184998 0.66 0.788259
Target:  5'- cCGGCCUGCcGCGC-UGcGaCUGGUUCGa -3'
miRNA:   3'- -GCCGGACGaCGCGcACaC-GGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 120579 0.66 0.743369
Target:  5'- aGGCgaUGCacgGCGCGgccGCCGGCUCc -3'
miRNA:   3'- gCCGg-ACGa--CGCGCacaCGGUCGAGu -5'
13976 5' -61.1 NC_003521.1 + 105913 0.66 0.744292
Target:  5'- aGGCCgcgucgaaguagacgGuCUGCGUGUG-GCCGGCg-- -3'
miRNA:   3'- gCCGGa--------------C-GACGCGCACaCGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 116935 0.66 0.761644
Target:  5'- aCGGCCUGCUGggcaacaGCGUGga-CGcGCUCu -3'
miRNA:   3'- -GCCGGACGACg------CGCACacgGU-CGAGu -5'
13976 5' -61.1 NC_003521.1 + 192087 0.66 0.761644
Target:  5'- uCGGCUugUGCUGCaGCGUc-GCCGGCg-- -3'
miRNA:   3'- -GCCGG--ACGACG-CGCAcaCGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 222154 0.66 0.761644
Target:  5'- uGGuCCUGCaGCGCccccGUG-GCCAGCa-- -3'
miRNA:   3'- gCC-GGACGaCGCG----CACaCGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 144205 0.66 0.77063
Target:  5'- aCGGCaaGCUGCaGCaGUGcgccgacgccUGCCuGCUCAu -3'
miRNA:   3'- -GCCGgaCGACG-CG-CAC----------ACGGuCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 131872 0.67 0.734096
Target:  5'- aCGGCCaucgUGCcGCGCGUGUcgGgCAGCg-- -3'
miRNA:   3'- -GCCGG----ACGaCGCGCACA--CgGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 110821 0.67 0.715317
Target:  5'- gCGGCC-GUUGCGCGccgccGCCGGCgCAg -3'
miRNA:   3'- -GCCGGaCGACGCGCaca--CGGUCGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.