miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13976 5' -61.1 NC_003521.1 + 207574 0.98 0.008445
Target:  5'- cCGGCCUGCUG-GCGUGUGCCAGCUCAa -3'
miRNA:   3'- -GCCGGACGACgCGCACACGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 126781 0.77 0.211358
Target:  5'- aGGCCcuggcGCUGCGCGUG-GuCCAGCUCc -3'
miRNA:   3'- gCCGGa----CGACGCGCACaC-GGUCGAGu -5'
13976 5' -61.1 NC_003521.1 + 109572 0.77 0.226669
Target:  5'- uCGGCUaGCaUGCGCGUGaagugcGCCAGCUCGg -3'
miRNA:   3'- -GCCGGaCG-ACGCGCACa-----CGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 138788 0.75 0.290954
Target:  5'- cCGGCCgUGCUGCGCGccGUGgCCcagguGCUCAa -3'
miRNA:   3'- -GCCGG-ACGACGCGCa-CAC-GGu----CGAGU- -5'
13976 5' -61.1 NC_003521.1 + 74887 0.73 0.353531
Target:  5'- aCGGCgCUGCUGCGCGagacgGUGgCGGCg-- -3'
miRNA:   3'- -GCCG-GACGACGCGCa----CACgGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 18430 0.73 0.361045
Target:  5'- gCGGCCUGCUcaagacGCGCGgccUGUGCC-GCUUc -3'
miRNA:   3'- -GCCGGACGA------CGCGC---ACACGGuCGAGu -5'
13976 5' -61.1 NC_003521.1 + 122221 0.73 0.368668
Target:  5'- -uGCCUGCgaGCGCGgGUGCCGGCg-- -3'
miRNA:   3'- gcCGGACGa-CGCGCaCACGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 155136 0.73 0.376402
Target:  5'- uGGagaaCCUGCgGCGCGUGcuggacGCCGGCUCGg -3'
miRNA:   3'- gCC----GGACGaCGCGCACa-----CGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 105629 0.73 0.384244
Target:  5'- gGGCgUGCUcGgGCGUGUGCgugaagccCAGCUCGg -3'
miRNA:   3'- gCCGgACGA-CgCGCACACG--------GUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 74351 0.73 0.392194
Target:  5'- uGGCgCUGCUGCGCGgcuacgGCCAGUgCGg -3'
miRNA:   3'- gCCG-GACGACGCGCaca---CGGUCGaGU- -5'
13976 5' -61.1 NC_003521.1 + 194291 0.72 0.445518
Target:  5'- aGGcCCUGgUGCGCcuggagaagacgcccGUGUGCCAGCa-- -3'
miRNA:   3'- gCC-GGACgACGCG---------------CACACGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 85374 0.72 0.450723
Target:  5'- aCGGgCUGCUGCgacucgcccaGCGggucgGCCAGCUCGc -3'
miRNA:   3'- -GCCgGACGACG----------CGCaca--CGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 126875 0.71 0.458593
Target:  5'- aGGCCUGCgucagugagacgUGCGCGUccGUGgcgauguccuccaCCAGCUCGc -3'
miRNA:   3'- gCCGGACG------------ACGCGCA--CAC-------------GGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 102773 0.71 0.480829
Target:  5'- gCGGCagcgGCUGCGCGaUGacgcgccggcggccGCCAGCUCGg -3'
miRNA:   3'- -GCCGga--CGACGCGC-ACa-------------CGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 215963 0.71 0.504496
Target:  5'- aGGaCCUGCUGCGagagGUG-GCCGGCg-- -3'
miRNA:   3'- gCC-GGACGACGCg---CACaCGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 206677 0.71 0.504496
Target:  5'- aGGCCUuCgUGCGCGUGgGCCuggcccuGCUCAu -3'
miRNA:   3'- gCCGGAcG-ACGCGCACaCGGu------CGAGU- -5'
13976 5' -61.1 NC_003521.1 + 138391 0.7 0.513732
Target:  5'- gCGGCCUGCgGCGCGUcuggaucgccguGUGgaCCAGcCUCu -3'
miRNA:   3'- -GCCGGACGaCGCGCA------------CAC--GGUC-GAGu -5'
13976 5' -61.1 NC_003521.1 + 76969 0.7 0.532407
Target:  5'- gCGGCCga-UGCGCGUGaUGCUGGCg-- -3'
miRNA:   3'- -GCCGGacgACGCGCAC-ACGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 24282 0.7 0.541836
Target:  5'- uGGCC-GCUGCaC-UGUGCUGGCUCGa -3'
miRNA:   3'- gCCGGaCGACGcGcACACGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 145427 0.7 0.55132
Target:  5'- gGGCUUGCUGgGCGccucgguggaccUGUGCUucggcguGCUCAa -3'
miRNA:   3'- gCCGGACGACgCGC------------ACACGGu------CGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.