miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13976 5' -61.1 NC_003521.1 + 232918 0.69 0.618798
Target:  5'- uGGaCCUGCUG-GUGUGUGUCuuucuacuAGCUCu -3'
miRNA:   3'- gCC-GGACGACgCGCACACGG--------UCGAGu -5'
13976 5' -61.1 NC_003521.1 + 222154 0.66 0.761644
Target:  5'- uGGuCCUGCaGCGCccccGUG-GCCAGCa-- -3'
miRNA:   3'- gCC-GGACGaCGCG----CACaCGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 215963 0.71 0.504496
Target:  5'- aGGaCCUGCUGCGagagGUG-GCCGGCg-- -3'
miRNA:   3'- gCC-GGACGACGCg---CACaCGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 212809 0.66 0.761644
Target:  5'- gCGGCgUGCUGgaggaggacaGCGagGUGCC-GCUCAc -3'
miRNA:   3'- -GCCGgACGACg---------CGCa-CACGGuCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 207574 0.98 0.008445
Target:  5'- cCGGCCUGCUG-GCGUGUGCCAGCUCAa -3'
miRNA:   3'- -GCCGGACGACgCGCACACGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 206677 0.71 0.504496
Target:  5'- aGGCCUuCgUGCGCGUGgGCCuggcccuGCUCAu -3'
miRNA:   3'- gCCGGAcG-ACGCGCACaCGGu------CGAGU- -5'
13976 5' -61.1 NC_003521.1 + 201668 0.66 0.788259
Target:  5'- gGGCCgcgaGCUGCGCcgccgGUGgCAGCa-- -3'
miRNA:   3'- gCCGGa---CGACGCGca---CACgGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 198791 0.68 0.647977
Target:  5'- gGGUagcaGCUGCGUG-GUGCCGGCg-- -3'
miRNA:   3'- gCCGga--CGACGCGCaCACGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 194291 0.72 0.445518
Target:  5'- aGGcCCUGgUGCGCcuggagaagacgcccGUGUGCCAGCa-- -3'
miRNA:   3'- gCC-GGACgACGCG---------------CACACGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 193265 0.68 0.647977
Target:  5'- aCGGUCgGCUGCggaGCGgGUGCCGGgaCGg -3'
miRNA:   3'- -GCCGGaCGACG---CGCaCACGGUCgaGU- -5'
13976 5' -61.1 NC_003521.1 + 192087 0.66 0.761644
Target:  5'- uCGGCUugUGCUGCaGCGUc-GCCGGCg-- -3'
miRNA:   3'- -GCCGG--ACGACG-CGCAcaCGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 184998 0.66 0.788259
Target:  5'- cCGGCCUGCcGCGC-UGcGaCUGGUUCGa -3'
miRNA:   3'- -GCCGGACGaCGCGcACaC-GGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 183913 0.67 0.714371
Target:  5'- aGGCggUGCUGCgGCGcUGUcgcgacgGCCAGCUCu -3'
miRNA:   3'- gCCGg-ACGACG-CGC-ACA-------CGGUCGAGu -5'
13976 5' -61.1 NC_003521.1 + 176488 0.66 0.752555
Target:  5'- gGGCCUGCagcuggcucaucUGCuCGUGUaccaugGCCAGCgUCGu -3'
miRNA:   3'- gCCGGACG------------ACGcGCACA------CGGUCG-AGU- -5'
13976 5' -61.1 NC_003521.1 + 168833 0.68 0.677052
Target:  5'- gGGCCccagcgaGCUGCGCGUcacGgacGCCgGGCUCAu -3'
miRNA:   3'- gCCGGa------CGACGCGCA---Ca--CGG-UCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 168609 0.69 0.589701
Target:  5'- uGGgCUGCUGgGCGUGcGCCAucuGCUg- -3'
miRNA:   3'- gCCgGACGACgCGCACaCGGU---CGAgu -5'
13976 5' -61.1 NC_003521.1 + 163647 0.67 0.686687
Target:  5'- gGGCCUcGgUGCGCGUcucgGUGCUgcggagcuGCUCAa -3'
miRNA:   3'- gCCGGA-CgACGCGCA----CACGGu-------CGAGU- -5'
13976 5' -61.1 NC_003521.1 + 155136 0.73 0.376402
Target:  5'- uGGagaaCCUGCgGCGCGUGcuggacGCCGGCUCGg -3'
miRNA:   3'- gCC----GGACGaCGCGCACa-----CGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 152316 0.67 0.734096
Target:  5'- aCGGCUgcgagucGCUGCGCGU--GCC-GCUCu -3'
miRNA:   3'- -GCCGGa------CGACGCGCAcaCGGuCGAGu -5'
13976 5' -61.1 NC_003521.1 + 148937 0.69 0.609082
Target:  5'- aGcGCCgUGCUGgCGCGUGUGCU-GCUgGa -3'
miRNA:   3'- gC-CGG-ACGAC-GCGCACACGGuCGAgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.