miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13976 5' -61.1 NC_003521.1 + 148937 0.69 0.609082
Target:  5'- aGcGCCgUGCUGgCGCGUGUGCU-GCUgGa -3'
miRNA:   3'- gC-CGG-ACGAC-GCGCACACGGuCGAgU- -5'
13976 5' -61.1 NC_003521.1 + 29422 0.69 0.608111
Target:  5'- gGGCCccggugacaGCUacaaccaGCGCGUGgGCCAGUUCAu -3'
miRNA:   3'- gCCGGa--------CGA-------CGCGCACaCGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 42572 0.69 0.59938
Target:  5'- aCGGCUaucGCUGCgGCGUcaGCCAGCUa- -3'
miRNA:   3'- -GCCGGa--CGACG-CGCAcaCGGUCGAgu -5'
13976 5' -61.1 NC_003521.1 + 80141 0.69 0.589701
Target:  5'- gCGGCCggUGCUGCGCGUccaGCC-GCUgGa -3'
miRNA:   3'- -GCCGG--ACGACGCGCAca-CGGuCGAgU- -5'
13976 5' -61.1 NC_003521.1 + 168609 0.69 0.589701
Target:  5'- uGGgCUGCUGgGCGUGcGCCAucuGCUg- -3'
miRNA:   3'- gCCgGACGACgCGCACaCGGU---CGAgu -5'
13976 5' -61.1 NC_003521.1 + 367 0.69 0.579086
Target:  5'- gCGGCgUGCUGUggaacgaaggugaGUGUGUGCUGGCgcgCGg -3'
miRNA:   3'- -GCCGgACGACG-------------CGCACACGGUCGa--GU- -5'
13976 5' -61.1 NC_003521.1 + 40689 0.69 0.579086
Target:  5'- gCGGCgUGCUGUggaacgaaggugaGUGUGUGCUGGCgcgCGg -3'
miRNA:   3'- -GCCGgACGACG-------------CGCACACGGUCGa--GU- -5'
13976 5' -61.1 NC_003521.1 + 21294 0.69 0.579086
Target:  5'- gCGGUCUgGCUGCGCGUGgcgGucaucgucaacuuCCAGCUg- -3'
miRNA:   3'- -GCCGGA-CGACGCGCACa--C-------------GGUCGAgu -5'
13976 5' -61.1 NC_003521.1 + 145427 0.7 0.55132
Target:  5'- gGGCUUGCUGgGCGccucgguggaccUGUGCUucggcguGCUCAa -3'
miRNA:   3'- gCCGGACGACgCGC------------ACACGGu------CGAGU- -5'
13976 5' -61.1 NC_003521.1 + 24282 0.7 0.541836
Target:  5'- uGGCC-GCUGCaC-UGUGCUGGCUCGa -3'
miRNA:   3'- gCCGGaCGACGcGcACACGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 76969 0.7 0.532407
Target:  5'- gCGGCCga-UGCGCGUGaUGCUGGCg-- -3'
miRNA:   3'- -GCCGGacgACGCGCAC-ACGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 138391 0.7 0.513732
Target:  5'- gCGGCCUGCgGCGCGUcuggaucgccguGUGgaCCAGcCUCu -3'
miRNA:   3'- -GCCGGACGaCGCGCA------------CAC--GGUC-GAGu -5'
13976 5' -61.1 NC_003521.1 + 206677 0.71 0.504496
Target:  5'- aGGCCUuCgUGCGCGUGgGCCuggcccuGCUCAu -3'
miRNA:   3'- gCCGGAcG-ACGCGCACaCGGu------CGAGU- -5'
13976 5' -61.1 NC_003521.1 + 215963 0.71 0.504496
Target:  5'- aGGaCCUGCUGCGagagGUG-GCCGGCg-- -3'
miRNA:   3'- gCC-GGACGACGCg---CACaCGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 102773 0.71 0.480829
Target:  5'- gCGGCagcgGCUGCGCGaUGacgcgccggcggccGCCAGCUCGg -3'
miRNA:   3'- -GCCGga--CGACGCGC-ACa-------------CGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 126875 0.71 0.458593
Target:  5'- aGGCCUGCgucagugagacgUGCGCGUccGUGgcgauguccuccaCCAGCUCGc -3'
miRNA:   3'- gCCGGACG------------ACGCGCA--CAC-------------GGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 85374 0.72 0.450723
Target:  5'- aCGGgCUGCUGCgacucgcccaGCGggucgGCCAGCUCGc -3'
miRNA:   3'- -GCCgGACGACG----------CGCaca--CGGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 194291 0.72 0.445518
Target:  5'- aGGcCCUGgUGCGCcuggagaagacgcccGUGUGCCAGCa-- -3'
miRNA:   3'- gCC-GGACgACGCG---------------CACACGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 74351 0.73 0.392194
Target:  5'- uGGCgCUGCUGCGCGgcuacgGCCAGUgCGg -3'
miRNA:   3'- gCCG-GACGACGCGCaca---CGGUCGaGU- -5'
13976 5' -61.1 NC_003521.1 + 105629 0.73 0.384244
Target:  5'- gGGCgUGCUcGgGCGUGUGCgugaagccCAGCUCGg -3'
miRNA:   3'- gCCGgACGA-CgCGCACACG--------GUCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.