miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13976 5' -61.1 NC_003521.1 + 131872 0.67 0.734096
Target:  5'- aCGGCCaucgUGCcGCGCGUGUcgGgCAGCg-- -3'
miRNA:   3'- -GCCGG----ACGaCGCGCACA--CgGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 130072 0.67 0.723803
Target:  5'- gCGGCCUGCUcuCGCuggccgaGUGgaacUGCCAGCUg- -3'
miRNA:   3'- -GCCGGACGAc-GCG-------CAC----ACGGUCGAgu -5'
13976 5' -61.1 NC_003521.1 + 22415 0.67 0.715317
Target:  5'- uGGCCaUGCUGCGCGgcgugGCCgAGUa-- -3'
miRNA:   3'- gCCGG-ACGACGCGCaca--CGG-UCGagu -5'
13976 5' -61.1 NC_003521.1 + 110821 0.67 0.715317
Target:  5'- gCGGCC-GUUGCGCGccgccGCCGGCgCAg -3'
miRNA:   3'- -GCCGGaCGACGCGCaca--CGGUCGaGU- -5'
13976 5' -61.1 NC_003521.1 + 110200 0.67 0.715317
Target:  5'- aGGCCgcugGCgUGCGCGUGUuuguacuuGCCguAGCUg- -3'
miRNA:   3'- gCCGGa---CG-ACGCGCACA--------CGG--UCGAgu -5'
13976 5' -61.1 NC_003521.1 + 183913 0.67 0.714371
Target:  5'- aGGCggUGCUGCgGCGcUGUcgcgacgGCCAGCUCu -3'
miRNA:   3'- gCCGg-ACGACG-CGC-ACA-------CGGUCGAGu -5'
13976 5' -61.1 NC_003521.1 + 91699 0.67 0.705827
Target:  5'- gGGCgUGCUGCG-GUcugcGUGCC-GCUCc -3'
miRNA:   3'- gCCGgACGACGCgCA----CACGGuCGAGu -5'
13976 5' -61.1 NC_003521.1 + 73968 0.67 0.696282
Target:  5'- uGuGCCUGCUGUGCGagcucaUGU-CCuGCUCGu -3'
miRNA:   3'- gC-CGGACGACGCGC------ACAcGGuCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 163647 0.67 0.686687
Target:  5'- gGGCCUcGgUGCGCGUcucgGUGCUgcggagcuGCUCAa -3'
miRNA:   3'- gCCGGA-CgACGCGCA----CACGGu-------CGAGU- -5'
13976 5' -61.1 NC_003521.1 + 136773 0.68 0.677052
Target:  5'- uGGCCUacCUGCGCGacaGCgGGCUCAc -3'
miRNA:   3'- gCCGGAc-GACGCGCacaCGgUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 168833 0.68 0.677052
Target:  5'- gGGCCccagcgaGCUGCGCGUcacGgacGCCgGGCUCAu -3'
miRNA:   3'- gCCGGa------CGACGCGCA---Ca--CGG-UCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 53194 0.68 0.667384
Target:  5'- uGGCCaGCgGCGCGcG-GcCCGGCUCGc -3'
miRNA:   3'- gCCGGaCGaCGCGCaCaC-GGUCGAGU- -5'
13976 5' -61.1 NC_003521.1 + 13981 0.68 0.667384
Target:  5'- gGGCCUGCccgGCGCGgcgGCgGGCg-- -3'
miRNA:   3'- gCCGGACGa--CGCGCacaCGgUCGagu -5'
13976 5' -61.1 NC_003521.1 + 22356 0.68 0.65769
Target:  5'- gGGCCacUGCgcccacgGCGUG-GUGCCGGC-CAu -3'
miRNA:   3'- gCCGG--ACGa------CGCGCaCACGGUCGaGU- -5'
13976 5' -61.1 NC_003521.1 + 73167 0.68 0.65769
Target:  5'- uCGGCCUGCgaccugGaCGCGgagcugGCCGGCaUCGa -3'
miRNA:   3'- -GCCGGACGa-----C-GCGCaca---CGGUCG-AGU- -5'
13976 5' -61.1 NC_003521.1 + 198791 0.68 0.647977
Target:  5'- gGGUagcaGCUGCGUG-GUGCCGGCg-- -3'
miRNA:   3'- gCCGga--CGACGCGCaCACGGUCGagu -5'
13976 5' -61.1 NC_003521.1 + 193265 0.68 0.647977
Target:  5'- aCGGUCgGCUGCggaGCGgGUGCCGGgaCGg -3'
miRNA:   3'- -GCCGGaCGACG---CGCaCACGGUCgaGU- -5'
13976 5' -61.1 NC_003521.1 + 33935 0.68 0.638253
Target:  5'- uGGUgCUGCUGUGCGgcGUGCgCGGCgagCAg -3'
miRNA:   3'- gCCG-GACGACGCGCa-CACG-GUCGa--GU- -5'
13976 5' -61.1 NC_003521.1 + 98820 0.68 0.63728
Target:  5'- aGGCguugcagCUGCUugGCGCGg--GCCAGCUCc -3'
miRNA:   3'- gCCG-------GACGA--CGCGCacaCGGUCGAGu -5'
13976 5' -61.1 NC_003521.1 + 232918 0.69 0.618798
Target:  5'- uGGaCCUGCUG-GUGUGUGUCuuucuacuAGCUCu -3'
miRNA:   3'- gCC-GGACGACgCGCACACGG--------UCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.