miRNA display CGI


Results 41 - 60 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 3' -61.8 NC_003521.1 + 55526 0.66 0.792174
Target:  5'- aCGGguaCGcGCAGCgaGCGCCGcGC-CGACg -3'
miRNA:   3'- -GCC---GC-CGUCGa-CGCGGCaCGuGCUGg -5'
13978 3' -61.8 NC_003521.1 + 185040 0.66 0.791327
Target:  5'- cCGGCGGCaaguucaucuucgAGCUGUaccGCCG-GcCGCG-CCu -3'
miRNA:   3'- -GCCGCCG-------------UCGACG---CGGCaC-GUGCuGG- -5'
13978 3' -61.8 NC_003521.1 + 221065 0.66 0.78963
Target:  5'- cCGaGCGGUGGCUGaaguggaagcccgaCGCCGU-CACcGCCa -3'
miRNA:   3'- -GC-CGCCGUCGAC--------------GCGGCAcGUGcUGG- -5'
13978 3' -61.8 NC_003521.1 + 174238 0.66 0.787076
Target:  5'- gGGCGcgucggagcucagacGCAcGUUGCGCUG-GCGCG-CCa -3'
miRNA:   3'- gCCGC---------------CGU-CGACGCGGCaCGUGCuGG- -5'
13978 3' -61.8 NC_003521.1 + 127373 0.66 0.783654
Target:  5'- uGcGCGGCAGgUGCGUgaUGaaggGCGGCCa -3'
miRNA:   3'- gC-CGCCGUCgACGCGgcACg---UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 107443 0.66 0.783654
Target:  5'- aGcGCGGaCcGCcGCGCUGUGCcgGCgGACCg -3'
miRNA:   3'- gC-CGCC-GuCGaCGCGGCACG--UG-CUGG- -5'
13978 3' -61.8 NC_003521.1 + 184964 0.66 0.783654
Target:  5'- gCGGCGGUgcgGGCcaGCGUggaccUGUGCAaGGCCg -3'
miRNA:   3'- -GCCGCCG---UCGa-CGCG-----GCACGUgCUGG- -5'
13978 3' -61.8 NC_003521.1 + 117423 0.66 0.783654
Target:  5'- gGGCGGCAuCUcGgGUCc-GCGCGGCCu -3'
miRNA:   3'- gCCGCCGUcGA-CgCGGcaCGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 123532 0.66 0.783654
Target:  5'- uGG-GGCAGCgUGaggggaGCCGgcacCACGGCCg -3'
miRNA:   3'- gCCgCCGUCG-ACg-----CGGCac--GUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 123230 0.66 0.783654
Target:  5'- gCGGCGGUAGgUG-GUCGUaGCGCcgcGCCc -3'
miRNA:   3'- -GCCGCCGUCgACgCGGCA-CGUGc--UGG- -5'
13978 3' -61.8 NC_003521.1 + 167458 0.66 0.783654
Target:  5'- aCGaUGaGCGuGCUGaggGCCGUGCGCGGCg -3'
miRNA:   3'- -GCcGC-CGU-CGACg--CGGCACGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 10433 0.66 0.783654
Target:  5'- gCGuGuCGGCGGUUGU-CCGcgGCACGugCg -3'
miRNA:   3'- -GC-C-GCCGUCGACGcGGCa-CGUGCugG- -5'
13978 3' -61.8 NC_003521.1 + 53200 0.66 0.783654
Target:  5'- gCGGCGcGCGGCccgGCucgcccuggcagGCCGUGC-CcACCg -3'
miRNA:   3'- -GCCGC-CGUCGa--CG------------CGGCACGuGcUGG- -5'
13978 3' -61.8 NC_003521.1 + 152773 0.66 0.783654
Target:  5'- aCGGCGucGCcucCUGCGCCuUGCGC-ACCg -3'
miRNA:   3'- -GCCGC--CGuc-GACGCGGcACGUGcUGG- -5'
13978 3' -61.8 NC_003521.1 + 143061 0.66 0.783654
Target:  5'- uGGUGGUGGUgGCGCCGgugGCGAUa -3'
miRNA:   3'- gCCGCCGUCGaCGCGGCacgUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 227597 0.66 0.783654
Target:  5'- aGGCauGGCAgGCUuggGCGCCGgucgGCccuccaacacgGCGGCCc -3'
miRNA:   3'- gCCG--CCGU-CGA---CGCGGCa---CG-----------UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 181280 0.66 0.783654
Target:  5'- aCGGCGucCAGCUGCaGCCGggaagagaaGCucaGGCCg -3'
miRNA:   3'- -GCCGCc-GUCGACG-CGGCa--------CGug-CUGG- -5'
13978 3' -61.8 NC_003521.1 + 25551 0.66 0.783654
Target:  5'- aCGGCGGaC-GCUGU--UGUGCagGCGGCCg -3'
miRNA:   3'- -GCCGCC-GuCGACGcgGCACG--UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 32402 0.66 0.783654
Target:  5'- gGGCGuGCgacacAGCaGC-CCGUggcGCACGGCCu -3'
miRNA:   3'- gCCGC-CG-----UCGaCGcGGCA---CGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 28591 0.66 0.783654
Target:  5'- aCGGCGGgCuGCUGCGCacCGccaccauccUGUACaugGACCa -3'
miRNA:   3'- -GCCGCC-GuCGACGCG--GC---------ACGUG---CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.