miRNA display CGI


Results 21 - 40 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 3' -61.8 NC_003521.1 + 87923 0.66 0.792174
Target:  5'- uGGCuGGCcGCcGCGCCGgGCAUG-CUc -3'
miRNA:   3'- gCCG-CCGuCGaCGCGGCaCGUGCuGG- -5'
13978 3' -61.8 NC_003521.1 + 213462 0.66 0.792174
Target:  5'- aGGCGucGCAcGUcaugacgGCGCCgGUGCACG-CCa -3'
miRNA:   3'- gCCGC--CGU-CGa------CGCGG-CACGUGCuGG- -5'
13978 3' -61.8 NC_003521.1 + 54614 0.66 0.792174
Target:  5'- aCGGC-GUAGUcgagGuCuaCGUGCACGGCCg -3'
miRNA:   3'- -GCCGcCGUCGa---C-GcgGCACGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 91992 0.66 0.792174
Target:  5'- cCGGCGcgaacggaGCGGgaGCGgCGagGCGCGGCg -3'
miRNA:   3'- -GCCGC--------CGUCgaCGCgGCa-CGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 87578 0.66 0.792174
Target:  5'- gGGCaGGCGGgUGCGCaCGcGgACGaagGCCg -3'
miRNA:   3'- gCCG-CCGUCgACGCG-GCaCgUGC---UGG- -5'
13978 3' -61.8 NC_003521.1 + 122110 0.66 0.792174
Target:  5'- gCGGCuGCAGCgGCGUCucGCcGCGGCUg -3'
miRNA:   3'- -GCCGcCGUCGaCGCGGcaCG-UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 180939 0.66 0.792174
Target:  5'- uGGUGGC-GCgGUGCCGUaguccGCGgGGCUc -3'
miRNA:   3'- gCCGCCGuCGaCGCGGCA-----CGUgCUGG- -5'
13978 3' -61.8 NC_003521.1 + 163691 0.66 0.792174
Target:  5'- gGGUcucGCAGC-GCaagGCCGUGCGCGAgUg -3'
miRNA:   3'- gCCGc--CGUCGaCG---CGGCACGUGCUgG- -5'
13978 3' -61.8 NC_003521.1 + 168423 0.66 0.792174
Target:  5'- gGGCgGGCGGCaGgGCCGcgGCgGCGGgCg -3'
miRNA:   3'- gCCG-CCGUCGaCgCGGCa-CG-UGCUgG- -5'
13978 3' -61.8 NC_003521.1 + 55526 0.66 0.792174
Target:  5'- aCGGguaCGcGCAGCgaGCGCCGcGC-CGACg -3'
miRNA:   3'- -GCC---GC-CGUCGa-CGCGGCaCGuGCUGg -5'
13978 3' -61.8 NC_003521.1 + 37727 0.66 0.792174
Target:  5'- aGGCGGC-GCUGCuuuauaucGUC-UGUGCGGCUg -3'
miRNA:   3'- gCCGCCGuCGACG--------CGGcACGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 150716 0.66 0.792174
Target:  5'- aGGgGGCGuaccuaggcaccGCUucuuuuuuaccGCGCgCGUGCGCGcCCg -3'
miRNA:   3'- gCCgCCGU------------CGA-----------CGCG-GCACGUGCuGG- -5'
13978 3' -61.8 NC_003521.1 + 181458 0.66 0.792174
Target:  5'- gCGGCGuccaGCGGCUggcGCGCCGccUGCAgcgUGGCg -3'
miRNA:   3'- -GCCGC----CGUCGA---CGCGGC--ACGU---GCUGg -5'
13978 3' -61.8 NC_003521.1 + 44161 0.66 0.792174
Target:  5'- uCGaGCaGCAGCUgGCGCCGUcgGUACu-CCg -3'
miRNA:   3'- -GC-CGcCGUCGA-CGCGGCA--CGUGcuGG- -5'
13978 3' -61.8 NC_003521.1 + 201377 0.66 0.792174
Target:  5'- -cGCGGCccucgGCGCCGgGCuCGGCCg -3'
miRNA:   3'- gcCGCCGucga-CGCGGCaCGuGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 108639 0.66 0.792174
Target:  5'- aGGCGGCugccgaucAGC-GCGCaCGUGUGCuuGAUCu -3'
miRNA:   3'- gCCGCCG--------UCGaCGCG-GCACGUG--CUGG- -5'
13978 3' -61.8 NC_003521.1 + 127118 0.66 0.792174
Target:  5'- uGGaagaGCAGC-GCGUCGUGCACcuCCa -3'
miRNA:   3'- gCCgc--CGUCGaCGCGGCACGUGcuGG- -5'
13978 3' -61.8 NC_003521.1 + 203993 0.66 0.792174
Target:  5'- cCGGCacaGCAGCgccgGC-CCGUGgcgcgugauCACGGCCu -3'
miRNA:   3'- -GCCGc--CGUCGa---CGcGGCAC---------GUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 229062 0.66 0.792174
Target:  5'- aGGacgaaGGCAGUcacccagGCGgCGUGgAUGGCCa -3'
miRNA:   3'- gCCg----CCGUCGa------CGCgGCACgUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 68686 0.66 0.792174
Target:  5'- aGGCGGCca-UGUGCCGcgacgaacuCAUGACCg -3'
miRNA:   3'- gCCGCCGucgACGCGGCac-------GUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.