miRNA display CGI


Results 21 - 40 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 3' -61.8 NC_003521.1 + 15894 0.71 0.505273
Target:  5'- gGGCGGCAGCacGCGCC-UGUAC-AUCu -3'
miRNA:   3'- gCCGCCGUCGa-CGCGGcACGUGcUGG- -5'
13978 3' -61.8 NC_003521.1 + 16564 0.67 0.702548
Target:  5'- -aGCGagaaAGCUGCGCC-UGCgagGCGACCg -3'
miRNA:   3'- gcCGCcg--UCGACGCGGcACG---UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 17016 0.73 0.395
Target:  5'- uGGCGGCGGCgcagGC-CCGUcGUcugGCGGCCc -3'
miRNA:   3'- gCCGCCGUCGa---CGcGGCA-CG---UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 17049 0.66 0.775016
Target:  5'- aCGGCGGUAaCgGCGCCGacaGCgaggACGACg -3'
miRNA:   3'- -GCCGCCGUcGaCGCGGCa--CG----UGCUGg -5'
13978 3' -61.8 NC_003521.1 + 17483 0.72 0.461114
Target:  5'- aCGGCaccGGUAGCgGCGCCGccgGuCACGGCg -3'
miRNA:   3'- -GCCG---CCGUCGaCGCGGCa--C-GUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 17792 0.7 0.551153
Target:  5'- aGGCcgucGGCGuGCUG-GCCGUGCgaccggcggacgACGACCc -3'
miRNA:   3'- gCCG----CCGU-CGACgCGGCACG------------UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 18478 0.67 0.693181
Target:  5'- gCGGCGaGUgucgccuggaggAGCUGC-CCGUGUGCcACCa -3'
miRNA:   3'- -GCCGC-CG------------UCGACGcGGCACGUGcUGG- -5'
13978 3' -61.8 NC_003521.1 + 18715 0.69 0.598221
Target:  5'- cCGGCuGUGGCUGcCGCUGgcgGCGgCGAUCg -3'
miRNA:   3'- -GCCGcCGUCGAC-GCGGCa--CGU-GCUGG- -5'
13978 3' -61.8 NC_003521.1 + 18747 0.76 0.252986
Target:  5'- uGGCGGCGGUgGCGCCGacgggucgcugcUGCgACGGCUg -3'
miRNA:   3'- gCCGCCGUCGaCGCGGC------------ACG-UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 18848 0.67 0.711865
Target:  5'- aGGCGGCuGUcgucaccuaaaaUGCuGCCGUaCgGCGACCg -3'
miRNA:   3'- gCCGCCGuCG------------ACG-CGGCAcG-UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 18907 0.69 0.626765
Target:  5'- -cGCGGCAGCcccgaagggugGCGCCGcGCGcCGGCa -3'
miRNA:   3'- gcCGCCGUCGa----------CGCGGCaCGU-GCUGg -5'
13978 3' -61.8 NC_003521.1 + 19061 0.66 0.748468
Target:  5'- aCGGCGGCGcggcgcagacGCUGaCGCUGUcguuccGCuugaucacccagACGGCCg -3'
miRNA:   3'- -GCCGCCGU----------CGAC-GCGGCA------CG------------UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 19193 0.7 0.560491
Target:  5'- gGGCGGCgAGCUaagGCCaUGCACGAUUg -3'
miRNA:   3'- gCCGCCG-UCGAcg-CGGcACGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 19460 0.66 0.782795
Target:  5'- gCGGCGGgAccaugucGCUGCGCggccagGUGCAggUGGCCc -3'
miRNA:   3'- -GCCGCCgU-------CGACGCGg-----CACGU--GCUGG- -5'
13978 3' -61.8 NC_003521.1 + 19664 0.67 0.730313
Target:  5'- uGG-GGCuGCUGCGCUGgGC-CGAgCCc -3'
miRNA:   3'- gCCgCCGuCGACGCGGCaCGuGCU-GG- -5'
13978 3' -61.8 NC_003521.1 + 20736 0.69 0.607722
Target:  5'- uGGCGGUgcaucAGCUGCGUguacgCGcUGCugGugCu -3'
miRNA:   3'- gCCGCCG-----UCGACGCG-----GC-ACGugCugG- -5'
13978 3' -61.8 NC_003521.1 + 21373 0.66 0.757415
Target:  5'- uCGuGCcGCAGCUGaccgaGCUGUGCgagcgcugggauACGGCCc -3'
miRNA:   3'- -GC-CGcCGUCGACg----CGGCACG------------UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 21937 0.66 0.775016
Target:  5'- gGGCGGCcucgGGCUGgaGCaGUGgGCGAgCg -3'
miRNA:   3'- gCCGCCG----UCGACg-CGgCACgUGCUgG- -5'
13978 3' -61.8 NC_003521.1 + 25551 0.66 0.783654
Target:  5'- aCGGCGGaC-GCUGU--UGUGCagGCGGCCg -3'
miRNA:   3'- -GCCGCC-GuCGACGcgGCACG--UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 25658 0.68 0.67432
Target:  5'- aGGCGGCAGaucGUGCUGgucCACGuCCu -3'
miRNA:   3'- gCCGCCGUCga-CGCGGCac-GUGCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.