miRNA display CGI


Results 21 - 40 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 3' -61.8 NC_003521.1 + 85110 0.78 0.196959
Target:  5'- uCGGCGGCGGCaGCGgCGggcgGCACGuaGCCu -3'
miRNA:   3'- -GCCGCCGUCGaCGCgGCa---CGUGC--UGG- -5'
13978 3' -61.8 NC_003521.1 + 72541 0.77 0.211069
Target:  5'- aGGCGGCGGCgacgGUGUCGUcGUcucGCGACCu -3'
miRNA:   3'- gCCGCCGUCGa---CGCGGCA-CG---UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 96787 0.77 0.215962
Target:  5'- cCGGCaGCAGCggcgGCGCuCGgGCACGAUCg -3'
miRNA:   3'- -GCCGcCGUCGa---CGCG-GCaCGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 155178 0.77 0.215962
Target:  5'- uGGCGGCcGCgGCuGCCGggggggaggUGCACGACCu -3'
miRNA:   3'- gCCGCCGuCGaCG-CGGC---------ACGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 235285 0.77 0.220953
Target:  5'- uGGCGGCGGCcGCGCCGgcUGC-CGucACCg -3'
miRNA:   3'- gCCGCCGUCGaCGCGGC--ACGuGC--UGG- -5'
13978 3' -61.8 NC_003521.1 + 91963 0.77 0.220953
Target:  5'- aGGCuGGCguAGCUGgCGCgGUGCACGGCa -3'
miRNA:   3'- gCCG-CCG--UCGAC-GCGgCACGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 171309 0.77 0.222976
Target:  5'- aGGCGGUgcugggccucaacgcGGcCUGCGCCGUcUACGACCa -3'
miRNA:   3'- gCCGCCG---------------UC-GACGCGGCAcGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 150567 0.77 0.226041
Target:  5'- uGGUGGCGGCgGCGgCG-GCGCGGCUc -3'
miRNA:   3'- gCCGCCGUCGaCGCgGCaCGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 73149 0.77 0.226041
Target:  5'- -aGCGGCGGCgGCGCCGccucgGCcuGCGACCu -3'
miRNA:   3'- gcCGCCGUCGaCGCGGCa----CG--UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 46266 0.77 0.231228
Target:  5'- uCGGUGGCGGUaGCGCagagGUGCAUGACg -3'
miRNA:   3'- -GCCGCCGUCGaCGCGg---CACGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 110690 0.77 0.236515
Target:  5'- uGGCGGCAGCggcgGCGCCGccgACGACg -3'
miRNA:   3'- gCCGCCGUCGa---CGCGGCacgUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 97277 0.77 0.241903
Target:  5'- uGGCGGCuGCUGCucgucGCCGgcggcGCGCGugCg -3'
miRNA:   3'- gCCGCCGuCGACG-----CGGCa----CGUGCugG- -5'
13978 3' -61.8 NC_003521.1 + 86442 0.76 0.247393
Target:  5'- uGGCGGCAGCgGCGaCCGagGaCGCGACa -3'
miRNA:   3'- gCCGCCGUCGaCGC-GGCa-C-GUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 18747 0.76 0.252986
Target:  5'- uGGCGGCGGUgGCGCCGacgggucgcugcUGCgACGGCUg -3'
miRNA:   3'- gCCGCCGUCGaCGCGGC------------ACG-UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 197662 0.76 0.252986
Target:  5'- uCGuGCGGCAGCaGCGCCaccaGCGCGugCa -3'
miRNA:   3'- -GC-CGCCGUCGaCGCGGca--CGUGCugG- -5'
13978 3' -61.8 NC_003521.1 + 187160 0.76 0.264483
Target:  5'- gCGGCGGCAGgaGCGgaagcaaCGUGCggagACGGCCc -3'
miRNA:   3'- -GCCGCCGUCgaCGCg------GCACG----UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 155262 0.76 0.264483
Target:  5'- gCGGCGGCGGCgGCGCCucaggcccGUcGCugGGCa -3'
miRNA:   3'- -GCCGCCGUCGaCGCGG--------CA-CGugCUGg -5'
13978 3' -61.8 NC_003521.1 + 144073 0.76 0.270389
Target:  5'- uGGCGGC-GCUGgGCaaCGUGCugGGCUu -3'
miRNA:   3'- gCCGCCGuCGACgCG--GCACGugCUGG- -5'
13978 3' -61.8 NC_003521.1 + 31085 0.76 0.2764
Target:  5'- cCGGCuGCcguGGCUGcCGCUGcGCACGACCu -3'
miRNA:   3'- -GCCGcCG---UCGAC-GCGGCaCGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 138037 0.76 0.2764
Target:  5'- uGGCGGCcGCcgGCGCCGUcaucGCGCaGCCg -3'
miRNA:   3'- gCCGCCGuCGa-CGCGGCA----CGUGcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.