miRNA display CGI


Results 1 - 20 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 3' -61.8 NC_003521.1 + 205350 1.11 0.001201
Target:  5'- gCGGCGGCAGCUGCGCCGUGCACGACCu -3'
miRNA:   3'- -GCCGCCGUCGACGCGGCACGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 76362 0.86 0.055434
Target:  5'- gCGGCGGCAGCgGCGaCCGUG-ACGGCCg -3'
miRNA:   3'- -GCCGCCGUCGaCGC-GGCACgUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 150626 0.86 0.059777
Target:  5'- gCGGCGGCuGCUGCGCaggcgggggCGUGCGCGACg -3'
miRNA:   3'- -GCCGCCGuCGACGCG---------GCACGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 31706 0.84 0.076759
Target:  5'- gCGGCGGCAGCaUGUGCgCGUGCugggacgccGCGGCCa -3'
miRNA:   3'- -GCCGCCGUCG-ACGCG-GCACG---------UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 196743 0.8 0.138191
Target:  5'- gCGGCGGCGccugcaccgucuGCUGCcccgGCCG-GCGCGACCg -3'
miRNA:   3'- -GCCGCCGU------------CGACG----CGGCaCGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 226371 0.8 0.148488
Target:  5'- gGaGCGGCGGCUGaCGCCGccGCAgGGCCg -3'
miRNA:   3'- gC-CGCCGUCGAC-GCGGCa-CGUgCUGG- -5'
13978 3' -61.8 NC_003521.1 + 98471 0.8 0.148488
Target:  5'- gCGGCGGCGGCcgcgGCgGCCGUgGCGgCGGCCu -3'
miRNA:   3'- -GCCGCCGUCGa---CG-CGGCA-CGU-GCUGG- -5'
13978 3' -61.8 NC_003521.1 + 120235 0.8 0.155365
Target:  5'- cCGGCaggagccGGCGGCcGCGCCGUGCAUcGCCu -3'
miRNA:   3'- -GCCG-------CCGUCGaCGCGGCACGUGcUGG- -5'
13978 3' -61.8 NC_003521.1 + 15653 0.8 0.155735
Target:  5'- uCGaGCGGCAGCacaGCGCCGagguggUGCGCGACUg -3'
miRNA:   3'- -GC-CGCCGUCGa--CGCGGC------ACGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 87251 0.79 0.163301
Target:  5'- aGGUGGUggAGCggcugUGCGCCGUGCGCGugGCCa -3'
miRNA:   3'- gCCGCCG--UCG-----ACGCGGCACGUGC--UGG- -5'
13978 3' -61.8 NC_003521.1 + 152532 0.79 0.167207
Target:  5'- aGGCGGCc-CUGCGCCaguucGUGCACGACa -3'
miRNA:   3'- gCCGCCGucGACGCGG-----CACGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 197782 0.79 0.167207
Target:  5'- uGGC-GCAGCUGUGCCGUGaa-GACCa -3'
miRNA:   3'- gCCGcCGUCGACGCGGCACgugCUGG- -5'
13978 3' -61.8 NC_003521.1 + 37994 0.79 0.167207
Target:  5'- --cCGGCAGCUGCGCCuGUcGUugGACCa -3'
miRNA:   3'- gccGCCGUCGACGCGG-CA-CGugCUGG- -5'
13978 3' -61.8 NC_003521.1 + 89740 0.79 0.171197
Target:  5'- aCGGgGGCGGUgacgGCaGCCG-GCGCGGCCg -3'
miRNA:   3'- -GCCgCCGUCGa---CG-CGGCaCGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 37393 0.79 0.175271
Target:  5'- aGGCGGCGGggGCGCCcgggccuuGUGCgACGGCCu -3'
miRNA:   3'- gCCGCCGUCgaCGCGG--------CACG-UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 130354 0.79 0.175271
Target:  5'- aCGuGCGGCcGCagGCGCCGUGCGCGcucagcGCCa -3'
miRNA:   3'- -GC-CGCCGuCGa-CGCGGCACGUGC------UGG- -5'
13978 3' -61.8 NC_003521.1 + 74546 0.78 0.183679
Target:  5'- -cGCGGacCAGCcGCGCCGUGCGCGugCc -3'
miRNA:   3'- gcCGCC--GUCGaCGCGGCACGUGCugG- -5'
13978 3' -61.8 NC_003521.1 + 49821 0.78 0.188015
Target:  5'- gGGCGccguGCAG-UGCGCCGUGCagACGGCCg -3'
miRNA:   3'- gCCGC----CGUCgACGCGGCACG--UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 155633 0.78 0.188015
Target:  5'- uCGGCGGCGGUgguagcagaaGCGCCGUGCugGGu- -3'
miRNA:   3'- -GCCGCCGUCGa---------CGCGGCACGugCUgg -5'
13978 3' -61.8 NC_003521.1 + 155639 0.78 0.188015
Target:  5'- gCGGUGGUAGCagaaGCGCCGUGCugGGu- -3'
miRNA:   3'- -GCCGCCGUCGa---CGCGGCACGugCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.