miRNA display CGI


Results 1 - 20 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 3' -61.8 NC_003521.1 + 127544 0.73 0.36432
Target:  5'- gCGGCGGCAGCa-CGCCGU---CGGCCa -3'
miRNA:   3'- -GCCGCCGUCGacGCGGCAcguGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 144073 0.76 0.270389
Target:  5'- uGGCGGC-GCUGgGCaaCGUGCugGGCUu -3'
miRNA:   3'- gCCGCCGuCGACgCG--GCACGugCUGG- -5'
13978 3' -61.8 NC_003521.1 + 97499 0.75 0.282518
Target:  5'- uCGGUGGCGGCUGUcucuaCCGcGgGCGACCa -3'
miRNA:   3'- -GCCGCCGUCGACGc----GGCaCgUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 146895 0.75 0.288742
Target:  5'- aCGGCgGGCAGCgguaGuCGCCGcuUGCcGCGACCa -3'
miRNA:   3'- -GCCG-CCGUCGa---C-GCGGC--ACG-UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 78148 0.75 0.295074
Target:  5'- gCGGCGGCGGCcGCGaaCGagGCACGAUCc -3'
miRNA:   3'- -GCCGCCGUCGaCGCg-GCa-CGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 239265 0.74 0.335329
Target:  5'- aCGGCGGguGUgGCGCCGagGCgaACGGCUc -3'
miRNA:   3'- -GCCGCCguCGaCGCGGCa-CG--UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 54546 0.74 0.342416
Target:  5'- cCGGCGGCuuuuugacGUUGCGCUugacgcggGUGUGCGGCCc -3'
miRNA:   3'- -GCCGCCGu-------CGACGCGG--------CACGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 102773 0.74 0.349611
Target:  5'- gCGGCaGCGGCUGCGCgaugaCGcGCcgGCGGCCg -3'
miRNA:   3'- -GCCGcCGUCGACGCG-----GCaCG--UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 59363 0.73 0.36432
Target:  5'- aGGCGGCGcgccagccGCUGgaCGCCGcgcagcacuUGUACGACCa -3'
miRNA:   3'- gCCGCCGU--------CGAC--GCGGC---------ACGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 18747 0.76 0.252986
Target:  5'- uGGCGGCGGUgGCGCCGacgggucgcugcUGCgACGGCUg -3'
miRNA:   3'- gCCGCCGUCGaCGCGGC------------ACG-UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 46266 0.77 0.231228
Target:  5'- uCGGUGGCGGUaGCGCagagGUGCAUGACg -3'
miRNA:   3'- -GCCGCCGUCGaCGCGg---CACGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 73149 0.77 0.226041
Target:  5'- -aGCGGCGGCgGCGCCGccucgGCcuGCGACCu -3'
miRNA:   3'- gcCGCCGUCGaCGCGGCa----CG--UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 31706 0.84 0.076759
Target:  5'- gCGGCGGCAGCaUGUGCgCGUGCugggacgccGCGGCCa -3'
miRNA:   3'- -GCCGCCGUCG-ACGCG-GCACG---------UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 196743 0.8 0.138191
Target:  5'- gCGGCGGCGccugcaccgucuGCUGCcccgGCCG-GCGCGACCg -3'
miRNA:   3'- -GCCGCCGU------------CGACG----CGGCaCGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 226371 0.8 0.148488
Target:  5'- gGaGCGGCGGCUGaCGCCGccGCAgGGCCg -3'
miRNA:   3'- gC-CGCCGUCGAC-GCGGCa-CGUgCUGG- -5'
13978 3' -61.8 NC_003521.1 + 130354 0.79 0.175271
Target:  5'- aCGuGCGGCcGCagGCGCCGUGCGCGcucagcGCCa -3'
miRNA:   3'- -GC-CGCCGuCGa-CGCGGCACGUGC------UGG- -5'
13978 3' -61.8 NC_003521.1 + 155633 0.78 0.188015
Target:  5'- uCGGCGGCGGUgguagcagaaGCGCCGUGCugGGu- -3'
miRNA:   3'- -GCCGCCGUCGa---------CGCGGCACGugCUgg -5'
13978 3' -61.8 NC_003521.1 + 72541 0.77 0.211069
Target:  5'- aGGCGGCGGCgacgGUGUCGUcGUcucGCGACCu -3'
miRNA:   3'- gCCGCCGUCGa---CGCGGCA-CG---UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 96787 0.77 0.215962
Target:  5'- cCGGCaGCAGCggcgGCGCuCGgGCACGAUCg -3'
miRNA:   3'- -GCCGcCGUCGa---CGCG-GCaCGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 150567 0.77 0.226041
Target:  5'- uGGUGGCGGCgGCGgCG-GCGCGGCUc -3'
miRNA:   3'- gCCGCCGUCGaCGCgGCaCGUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.