miRNA display CGI


Results 1 - 20 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 3' -61.8 NC_003521.1 + 31847 0.66 0.748468
Target:  5'- aGGUGGCguugaagaagacGGCgGCGCgGUGCgaGCGguACCg -3'
miRNA:   3'- gCCGCCG------------UCGaCGCGgCACG--UGC--UGG- -5'
13978 3' -61.8 NC_003521.1 + 203718 0.66 0.748468
Target:  5'- gCGaCGGCAGCaGCaGCCG-GgGCGACa -3'
miRNA:   3'- -GCcGCCGUCGaCG-CGGCaCgUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 44227 0.66 0.748468
Target:  5'- gGGCuGCucaAGCucUGcCGCCGUGCGCGGgaguCCg -3'
miRNA:   3'- gCCGcCG---UCG--AC-GCGGCACGUGCU----GG- -5'
13978 3' -61.8 NC_003521.1 + 167715 0.66 0.748468
Target:  5'- gCGGCGGUAGCaGCGguaGUGguaGACCg -3'
miRNA:   3'- -GCCGCCGUCGaCGCgg-CACgugCUGG- -5'
13978 3' -61.8 NC_003521.1 + 150485 0.66 0.765387
Target:  5'- uGGUGGggcccuuCAGCUuuuacgGCGCCG-GCGgGGCCc -3'
miRNA:   3'- gCCGCC-------GUCGA------CGCGGCaCGUgCUGG- -5'
13978 3' -61.8 NC_003521.1 + 174036 0.66 0.757415
Target:  5'- aCGGCGGUGGCc-CGCaCGUGggcuGCGAUCg -3'
miRNA:   3'- -GCCGCCGUCGacGCG-GCACg---UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 149741 0.66 0.748468
Target:  5'- aCGaGUGGCAGgucuuCUGCGgCGaGgGCGGCCg -3'
miRNA:   3'- -GC-CGCCGUC-----GACGCgGCaCgUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 115262 0.66 0.766267
Target:  5'- uCGGgGGCAGCaUGC-CCGU-CACGGg- -3'
miRNA:   3'- -GCCgCCGUCG-ACGcGGCAcGUGCUgg -5'
13978 3' -61.8 NC_003521.1 + 196692 0.66 0.800568
Target:  5'- -cGCGGCuGUUGCGguaGUGguUGGCCa -3'
miRNA:   3'- gcCGCCGuCGACGCgg-CACguGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 239159 0.66 0.753847
Target:  5'- uGGCGGCAGUagaucguuagccaGCGaCUGggcaGCACGACg -3'
miRNA:   3'- gCCGCCGUCGa------------CGC-GGCa---CGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 138833 0.66 0.766267
Target:  5'- uGGCGGCGGCUaCGgCCu---GCGGCCa -3'
miRNA:   3'- gCCGCCGUCGAcGC-GGcacgUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 103453 0.66 0.757415
Target:  5'- -cGCGGCGGUUGCGCgc--CACGGCg -3'
miRNA:   3'- gcCGCCGUCGACGCGgcacGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 31435 0.66 0.748468
Target:  5'- aGGCGGaugauGCgcaGCGCCa-GCACGGCg -3'
miRNA:   3'- gCCGCCgu---CGa--CGCGGcaCGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 192165 0.66 0.748468
Target:  5'- aGGUcuGCGGUgucaGCGCCG-GuCGCGGCCa -3'
miRNA:   3'- gCCGc-CGUCGa---CGCGGCaC-GUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 41110 0.66 0.747568
Target:  5'- gCGGUGGUgcuggucacccAGUUGCuGUccaaccaCGUGCACGGCUa -3'
miRNA:   3'- -GCCGCCG-----------UCGACG-CG-------GCACGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 131721 0.66 0.757415
Target:  5'- uGGUGuGCAacagcaaucgucGCUG-GaCGUGCACGGCCu -3'
miRNA:   3'- gCCGC-CGU------------CGACgCgGCACGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 19061 0.66 0.748468
Target:  5'- aCGGCGGCGcggcgcagacGCUGaCGCUGUcguuccGCuugaucacccagACGGCCg -3'
miRNA:   3'- -GCCGCCGU----------CGAC-GCGGCA------CG------------UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 89546 0.66 0.757415
Target:  5'- -cGCGGuCGGCguaaGCGCCGUagcGCAC-ACCc -3'
miRNA:   3'- gcCGCC-GUCGa---CGCGGCA---CGUGcUGG- -5'
13978 3' -61.8 NC_003521.1 + 31097 0.66 0.766267
Target:  5'- aCGGCGGCGGCcgguacacgcgGCGCaacuugaaCGUGUGCaGGCa -3'
miRNA:   3'- -GCCGCCGUCGa----------CGCG--------GCACGUG-CUGg -5'
13978 3' -61.8 NC_003521.1 + 219359 0.66 0.757415
Target:  5'- aGGCcGcCAGCUGCacGCCGUgaaGCGCGAa- -3'
miRNA:   3'- gCCGcC-GUCGACG--CGGCA---CGUGCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.