miRNA display CGI


Results 1 - 20 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 3' -61.8 NC_003521.1 + 71 0.72 0.444026
Target:  5'- -cGCGGCGGCgUGCGgCGgGC-CGGCCg -3'
miRNA:   3'- gcCGCCGUCG-ACGCgGCaCGuGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 364 0.7 0.569871
Target:  5'- aGGCGGCGcCUGCGaCCGcUGCcCG-CCu -3'
miRNA:   3'- gCCGCCGUcGACGC-GGC-ACGuGCuGG- -5'
13978 3' -61.8 NC_003521.1 + 400 0.69 0.578347
Target:  5'- uGGCGcGCGGCUGUgacugcaGCUGUGUGCuggcgaGGCCa -3'
miRNA:   3'- gCCGC-CGUCGACG-------CGGCACGUG------CUGG- -5'
13978 3' -61.8 NC_003521.1 + 979 0.7 0.551153
Target:  5'- aGGcCGGCGGuCUGCucCCGUGgGcCGGCCg -3'
miRNA:   3'- gCC-GCCGUC-GACGc-GGCACgU-GCUGG- -5'
13978 3' -61.8 NC_003521.1 + 1565 0.66 0.798063
Target:  5'- uCGGCGccacacccgccgucGCuGCUGacgGCCGUGCAgcGCCa -3'
miRNA:   3'- -GCCGC--------------CGuCGACg--CGGCACGUgcUGG- -5'
13978 3' -61.8 NC_003521.1 + 5314 0.71 0.496289
Target:  5'- gCGGgGGCGGC-GUGCCccGC-CGGCCg -3'
miRNA:   3'- -GCCgCCGUCGaCGCGGcaCGuGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 5533 0.69 0.617239
Target:  5'- aCGGUGaCGGCa--GCCG-GCGCGGCCg -3'
miRNA:   3'- -GCCGCcGUCGacgCGGCaCGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 6053 0.69 0.626765
Target:  5'- gGGCGGUAGC-GgGUCGacgaagggaaUGCgACGGCCg -3'
miRNA:   3'- gCCGCCGUCGaCgCGGC----------ACG-UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 7001 0.71 0.475031
Target:  5'- aCGGCGGUggauaccguacuugGGCUgGCGCUGcUGCACguagaaaGACCa -3'
miRNA:   3'- -GCCGCCG--------------UCGA-CGCGGC-ACGUG-------CUGG- -5'
13978 3' -61.8 NC_003521.1 + 7616 0.69 0.598221
Target:  5'- aCGGUGGCGGCggacUGUCGggaACGACCg -3'
miRNA:   3'- -GCCGCCGUCGac--GCGGCacgUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 7989 0.74 0.354711
Target:  5'- gCGGCGGCgggggagguaccggGGCaGCGCCGUaGCuccaGACCg -3'
miRNA:   3'- -GCCGCCG--------------UCGaCGCGGCA-CGug--CUGG- -5'
13978 3' -61.8 NC_003521.1 + 10433 0.66 0.783654
Target:  5'- gCGuGuCGGCGGUUGU-CCGcgGCACGugCg -3'
miRNA:   3'- -GC-C-GCCGUCGACGcGGCa-CGUGCugG- -5'
13978 3' -61.8 NC_003521.1 + 12832 0.68 0.664842
Target:  5'- uGGCaGCAGCUcaaCGaucaCGUGCGCGAgCa -3'
miRNA:   3'- gCCGcCGUCGAc--GCg---GCACGUGCUgG- -5'
13978 3' -61.8 NC_003521.1 + 13191 0.67 0.711865
Target:  5'- aGGCGuGCcGCUcggGcCGCCGUGUugGaggGCCg -3'
miRNA:   3'- gCCGC-CGuCGA---C-GCGGCACGugC---UGG- -5'
13978 3' -61.8 NC_003521.1 + 13463 0.69 0.607722
Target:  5'- -aGCGGCGGUaGCGCCGUcgacggucuGgGCGACg -3'
miRNA:   3'- gcCGCCGUCGaCGCGGCA---------CgUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 14696 0.68 0.67432
Target:  5'- uGGUGGUggGGCauccGCGCCaaccuGUGCACG-CCg -3'
miRNA:   3'- gCCGCCG--UCGa---CGCGG-----CACGUGCuGG- -5'
13978 3' -61.8 NC_003521.1 + 14787 0.68 0.642965
Target:  5'- aGGUGcuGguGCUgcuggacugguucgGCGCCGUGUACG-CCa -3'
miRNA:   3'- gCCGC--CguCGA--------------CGCGGCACGUGCuGG- -5'
13978 3' -61.8 NC_003521.1 + 15653 0.8 0.155735
Target:  5'- uCGaGCGGCAGCacaGCGCCGagguggUGCGCGACUg -3'
miRNA:   3'- -GC-CGCCGUCGa--CGCGGC------ACGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 15759 0.69 0.626765
Target:  5'- gGGCaGCAGCaUGC-CCGaGCuacGCGACCa -3'
miRNA:   3'- gCCGcCGUCG-ACGcGGCaCG---UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 15815 0.66 0.766267
Target:  5'- cCGaGCGGCucaucgugcugGGCaagUGCGUgGUGCugguggGCGACCg -3'
miRNA:   3'- -GC-CGCCG-----------UCG---ACGCGgCACG------UGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.