miRNA display CGI


Results 1 - 20 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 3' -61.8 NC_003521.1 + 240620 0.72 0.444026
Target:  5'- -cGCGGCGGCgUGCGgCGgGC-CGGCCg -3'
miRNA:   3'- gcCGCCGUCG-ACGCgGCaCGuGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 240457 0.68 0.673373
Target:  5'- aGGCgGGCAGCggucgcagGCGCCGccuccgGCAgcucacgcuugguUGGCCg -3'
miRNA:   3'- gCCG-CCGUCGa-------CGCGGCa-----CGU-------------GCUGG- -5'
13978 3' -61.8 NC_003521.1 + 239803 0.66 0.774146
Target:  5'- uGGCuGcGCGGCgugaUGCGCgCGUagaagccGUACGGCCg -3'
miRNA:   3'- gCCG-C-CGUCG----ACGCG-GCA-------CGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 239353 0.66 0.775016
Target:  5'- gGGCGucuGCAGCgggaUGC-CCGUGUGCuGCCa -3'
miRNA:   3'- gCCGC---CGUCG----ACGcGGCACGUGcUGG- -5'
13978 3' -61.8 NC_003521.1 + 239265 0.74 0.335329
Target:  5'- aCGGCGGguGUgGCGCCGagGCgaACGGCUc -3'
miRNA:   3'- -GCCGCCguCGaCGCGGCa-CG--UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 239225 0.67 0.730313
Target:  5'- aGGCgcuGGUGGaUGUGgCGcUGCACGGCCg -3'
miRNA:   3'- gCCG---CCGUCgACGCgGC-ACGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 239159 0.66 0.753847
Target:  5'- uGGCGGCAGUagaucguuagccaGCGaCUGggcaGCACGACg -3'
miRNA:   3'- gCCGCCGUCGa------------CGC-GGCa---CGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 238651 0.67 0.729398
Target:  5'- gGGCGGUuGCUGCaacuguugcaguuGCUGcUGCugGAgCa -3'
miRNA:   3'- gCCGCCGuCGACG-------------CGGC-ACGugCUgG- -5'
13978 3' -61.8 NC_003521.1 + 236488 0.72 0.435617
Target:  5'- cCGGCGGCGGUgGCGCCaG-GCAUgGACg -3'
miRNA:   3'- -GCCGCCGUCGaCGCGG-CaCGUG-CUGg -5'
13978 3' -61.8 NC_003521.1 + 235285 0.77 0.220953
Target:  5'- uGGCGGCGGCcGCGCCGgcUGC-CGucACCg -3'
miRNA:   3'- gCCGCCGUCGaCGCGGC--ACGuGC--UGG- -5'
13978 3' -61.8 NC_003521.1 + 234439 0.72 0.435617
Target:  5'- -cGCGGUAGCUGCGgCGccccucCGCGACCc -3'
miRNA:   3'- gcCGCCGUCGACGCgGCac----GUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 232564 0.67 0.721122
Target:  5'- aCGGgGGCuGCUGUGUgGUGagcgggggGCGACa -3'
miRNA:   3'- -GCCgCCGuCGACGCGgCACg-------UGCUGg -5'
13978 3' -61.8 NC_003521.1 + 232380 0.68 0.649631
Target:  5'- gCGGaGGUccaccgucucgcgcuGGCUGCGCCugcgGCACGGCa -3'
miRNA:   3'- -GCCgCCG---------------UCGACGCGGca--CGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 231907 0.68 0.67432
Target:  5'- gCGGCaGCGGCUcuucucccGCGCCGUaGCcagcuaccaGACCa -3'
miRNA:   3'- -GCCGcCGUCGA--------CGCGGCA-CGug-------CUGG- -5'
13978 3' -61.8 NC_003521.1 + 229062 0.66 0.792174
Target:  5'- aGGacgaaGGCAGUcacccagGCGgCGUGgAUGGCCa -3'
miRNA:   3'- gCCg----CCGUCGa------CGCgGCACgUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 227597 0.66 0.783654
Target:  5'- aGGCauGGCAgGCUuggGCGCCGgucgGCccuccaacacgGCGGCCc -3'
miRNA:   3'- gCCG--CCGU-CGA---CGCGGCa---CG-----------UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 226871 0.69 0.611527
Target:  5'- gGGCguccagcgagGGCAGCUGCgggggcaccacggcgGCCa-GCGCGGCCu -3'
miRNA:   3'- gCCG----------CCGUCGACG---------------CGGcaCGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 226371 0.8 0.148488
Target:  5'- gGaGCGGCGGCUGaCGCCGccGCAgGGCCg -3'
miRNA:   3'- gC-CGCCGUCGAC-GCGGCa-CGUgCUGG- -5'
13978 3' -61.8 NC_003521.1 + 226153 0.68 0.673373
Target:  5'- gCGGCGGCAcucgGCGUCGUucaGCGCGcagaaggGCCa -3'
miRNA:   3'- -GCCGCCGUcga-CGCGGCA---CGUGC-------UGG- -5'
13978 3' -61.8 NC_003521.1 + 224746 0.68 0.683769
Target:  5'- aGGCGGcCAGC-GCGUCGggGCucCGGCa -3'
miRNA:   3'- gCCGCC-GUCGaCGCGGCa-CGu-GCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.