miRNA display CGI


Results 21 - 40 of 561 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13978 3' -61.8 NC_003521.1 + 79662 0.66 0.775016
Target:  5'- -aGCGGCGacuGUUGCGaacgaCGUcCGCGACCg -3'
miRNA:   3'- gcCGCCGU---CGACGCg----GCAcGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 103453 0.66 0.757415
Target:  5'- -cGCGGCGGUUGCGCgc--CACGGCg -3'
miRNA:   3'- gcCGCCGUCGACGCGgcacGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 239159 0.66 0.753847
Target:  5'- uGGCGGCAGUagaucguuagccaGCGaCUGggcaGCACGACg -3'
miRNA:   3'- gCCGCCGUCGa------------CGC-GGCa---CGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 219238 0.66 0.766267
Target:  5'- aGGacccaGGuCAGCaGCGCCGgguagaGCAgGGCCc -3'
miRNA:   3'- gCCg----CC-GUCGaCGCGGCa-----CGUgCUGG- -5'
13978 3' -61.8 NC_003521.1 + 98906 0.66 0.781935
Target:  5'- gCGGCGGagaacaugggcgAGUUGUGUCGgaucGCGgGACCg -3'
miRNA:   3'- -GCCGCCg-----------UCGACGCGGCa---CGUgCUGG- -5'
13978 3' -61.8 NC_003521.1 + 19061 0.66 0.748468
Target:  5'- aCGGCGGCGcggcgcagacGCUGaCGCUGUcguuccGCuugaucacccagACGGCCg -3'
miRNA:   3'- -GCCGCCGU----------CGAC-GCGGCA------CG------------UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 32402 0.66 0.783654
Target:  5'- gGGCGuGCgacacAGCaGC-CCGUggcGCACGGCCu -3'
miRNA:   3'- gCCGC-CG-----UCGaCGcGGCA---CGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 213736 0.66 0.775016
Target:  5'- aCGGCGccGCAGaaG-GCCGUGgugGCGGCCa -3'
miRNA:   3'- -GCCGC--CGUCgaCgCGGCACg--UGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 89546 0.66 0.757415
Target:  5'- -cGCGGuCGGCguaaGCGCCGUagcGCAC-ACCc -3'
miRNA:   3'- gcCGCC-GUCGa---CGCGGCA---CGUGcUGG- -5'
13978 3' -61.8 NC_003521.1 + 219359 0.66 0.757415
Target:  5'- aGGCcGcCAGCUGCacGCCGUgaaGCGCGAa- -3'
miRNA:   3'- gCCGcC-GUCGACG--CGGCA---CGUGCUgg -5'
13978 3' -61.8 NC_003521.1 + 239803 0.66 0.774146
Target:  5'- uGGCuGcGCGGCgugaUGCGCgCGUagaagccGUACGGCCg -3'
miRNA:   3'- gCCG-C-CGUCG----ACGCG-GCA-------CGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 218036 0.66 0.775016
Target:  5'- gGGCGGCGGCgGCGuCCGcagGUagAUGAgguCCa -3'
miRNA:   3'- gCCGCCGUCGaCGC-GGCa--CG--UGCU---GG- -5'
13978 3' -61.8 NC_003521.1 + 43641 0.66 0.775016
Target:  5'- aGGCGGCGGCcGcCGCCGgagaGCAgaGAg- -3'
miRNA:   3'- gCCGCCGUCGaC-GCGGCa---CGUg-CUgg -5'
13978 3' -61.8 NC_003521.1 + 34998 0.66 0.774146
Target:  5'- cCGG-GGcCAGCgagcgcuUGCGUCGUGCcCGGCg -3'
miRNA:   3'- -GCCgCC-GUCG-------ACGCGGCACGuGCUGg -5'
13978 3' -61.8 NC_003521.1 + 164697 0.66 0.757415
Target:  5'- aGGcCGGCGGCUGaCGaagaagacgaCGcgGUGCGGCCu -3'
miRNA:   3'- gCC-GCCGUCGAC-GCg---------GCa-CGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 41110 0.66 0.747568
Target:  5'- gCGGUGGUgcuggucacccAGUUGCuGUccaaccaCGUGCACGGCUa -3'
miRNA:   3'- -GCCGCCG-----------UCGACG-CG-------GCACGUGCUGG- -5'
13978 3' -61.8 NC_003521.1 + 31847 0.66 0.748468
Target:  5'- aGGUGGCguugaagaagacGGCgGCGCgGUGCgaGCGguACCg -3'
miRNA:   3'- gCCGCCG------------UCGaCGCGgCACG--UGC--UGG- -5'
13978 3' -61.8 NC_003521.1 + 136723 0.66 0.775016
Target:  5'- aGGaUGGCAGC-GCGCCGccuucCGCGuCCu -3'
miRNA:   3'- gCC-GCCGUCGaCGCGGCac---GUGCuGG- -5'
13978 3' -61.8 NC_003521.1 + 149991 0.66 0.766267
Target:  5'- gGGCGGCGcGCaccCGCC--GCACGACg -3'
miRNA:   3'- gCCGCCGU-CGac-GCGGcaCGUGCUGg -5'
13978 3' -61.8 NC_003521.1 + 31097 0.66 0.766267
Target:  5'- aCGGCGGCGGCcgguacacgcgGCGCaacuugaaCGUGUGCaGGCa -3'
miRNA:   3'- -GCCGCCGUCGa----------CGCG--------GCACGUG-CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.