miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 43539 0.66 0.754388
Target:  5'- cGUCGAGC-CGCCcucccgcuccccGCCGCcggCGCcGCGu -3'
miRNA:   3'- -CAGCUCGaGCGGa-----------CGGCGa--GCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 129415 0.66 0.747128
Target:  5'- cUCGGGgUCGUC-GCCGUaguagaugCGCAGCGc -3'
miRNA:   3'- cAGCUCgAGCGGaCGGCGa-------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 126980 0.66 0.747128
Target:  5'- cGUCGccGGC-CGCCccgcUGCCGCUgcccgaCGUGGCGg -3'
miRNA:   3'- -CAGC--UCGaGCGG----ACGGCGA------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 124467 0.66 0.747128
Target:  5'- -aCGcGUUCGCC-GCCGCgcUCGCGGUc -3'
miRNA:   3'- caGCuCGAGCGGaCGGCG--AGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 43277 0.66 0.747128
Target:  5'- --gGAGCUCGCC-GCCGCUCuCGuccGCc -3'
miRNA:   3'- cagCUCGAGCGGaCGGCGAGcGU---CGc -5'
13979 5' -61.4 NC_003521.1 + 137309 0.66 0.746216
Target:  5'- -gCGAGUucgcgCGCCUGCUGCugggcucgcccuuUCGcCAGCGc -3'
miRNA:   3'- caGCUCGa----GCGGACGGCG-------------AGC-GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 208660 0.67 0.737972
Target:  5'- uUCGAuggaacaacGCgggCGCCUuccGCCGCUUGguGCa -3'
miRNA:   3'- cAGCU---------CGa--GCGGA---CGGCGAGCguCGc -5'
13979 5' -61.4 NC_003521.1 + 135208 0.67 0.737972
Target:  5'- -cCGAGCaCGcCCUGCUGCagCGCcugAGCGg -3'
miRNA:   3'- caGCUCGaGC-GGACGGCGa-GCG---UCGC- -5'
13979 5' -61.4 NC_003521.1 + 126832 0.67 0.733363
Target:  5'- -gCGuGCUCGCCcacgaacUGCaccgccaggaacaGCUCGCGGCa -3'
miRNA:   3'- caGCuCGAGCGG-------ACGg------------CGAGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 145874 0.67 0.728735
Target:  5'- -gCGGGCggCGCCgacgacgagGCCGC-CGgCGGCGg -3'
miRNA:   3'- caGCUCGa-GCGGa--------CGGCGaGC-GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 186933 0.67 0.728735
Target:  5'- -aCGAGCgCGUgaCUGUCGUUgCGCAGCa -3'
miRNA:   3'- caGCUCGaGCG--GACGGCGA-GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 129825 0.67 0.728735
Target:  5'- -cUGGGC-CGCCUGCUGCUggggccCGUGGCc -3'
miRNA:   3'- caGCUCGaGCGGACGGCGA------GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 8335 0.67 0.728735
Target:  5'- cGUUGAGCUUgacgaaGCUgggGUagCGCUCGCAGCc -3'
miRNA:   3'- -CAGCUCGAG------CGGa--CG--GCGAGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 142560 0.67 0.727807
Target:  5'- uGUCGcccgccaGGCUCGCCgUGcCCGC-CGUGGCc -3'
miRNA:   3'- -CAGC-------UCGAGCGG-AC-GGCGaGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 88144 0.67 0.719424
Target:  5'- -cCGAGC-CGCUggagcgGCUGCUgaCGCAGCu -3'
miRNA:   3'- caGCUCGaGCGGa-----CGGCGA--GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 205927 0.67 0.710046
Target:  5'- uUCGAGggCGCCUGCgucuCGCugggcuggcccUCGCAGUGc -3'
miRNA:   3'- cAGCUCgaGCGGACG----GCG-----------AGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 33097 0.67 0.710046
Target:  5'- -aCGGGCUCcaGCCaGCCGaugacggCGUAGCGg -3'
miRNA:   3'- caGCUCGAG--CGGaCGGCga-----GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 193158 0.67 0.709105
Target:  5'- -gCGGGggCGUCUGCUGCUgcuguugCGCAGCu -3'
miRNA:   3'- caGCUCgaGCGGACGGCGA-------GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 119897 0.67 0.700609
Target:  5'- --gGAGC-CGCC-GCCGCggGCAGCc -3'
miRNA:   3'- cagCUCGaGCGGaCGGCGagCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 198821 0.67 0.694923
Target:  5'- uGUCGuGC-CGCCguguUGCUGCUgcgaccuuaagaaggCGCGGCGg -3'
miRNA:   3'- -CAGCuCGaGCGG----ACGGCGA---------------GCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.