miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 53211 0.66 0.782777
Target:  5'- -gUGAGCUCGCCggggaGuCCGCgggCGaAGCGa -3'
miRNA:   3'- caGCUCGAGCGGa----C-GGCGa--GCgUCGC- -5'
13979 5' -61.4 NC_003521.1 + 53497 0.72 0.439515
Target:  5'- cGUCGAgGC-CGCugCUGCgGCgUCGCAGCGg -3'
miRNA:   3'- -CAGCU-CGaGCG--GACGgCG-AGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 56138 0.71 0.492138
Target:  5'- cGUCGGGCgagugCgGCUcgUGCUGCUCGCuGCGc -3'
miRNA:   3'- -CAGCUCGa----G-CGG--ACGGCGAGCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 58955 0.74 0.34474
Target:  5'- -gCGAGCUCGCCgagggGUCGUgCGUGGCGa -3'
miRNA:   3'- caGCUCGAGCGGa----CGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 69849 0.7 0.519519
Target:  5'- gGUCGAuGacgCGCCgaugagGCCGCcgCGCAGCGc -3'
miRNA:   3'- -CAGCU-Cga-GCGGa-----CGGCGa-GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 70352 0.72 0.431058
Target:  5'- cGUUGAGCUUGUCggcgggguagaGCCGCagGCGGCGg -3'
miRNA:   3'- -CAGCUCGAGCGGa----------CGGCGagCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 79641 0.73 0.390252
Target:  5'- cUCG-GCgUCGUCUGCUGCU-GCAGCGg -3'
miRNA:   3'- cAGCuCG-AGCGGACGGCGAgCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 87943 0.68 0.643178
Target:  5'- -aCGAGCUgcgCGaCCUGCUGacacgcuacgcCUCGCGGCGc -3'
miRNA:   3'- caGCUCGA---GC-GGACGGC-----------GAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 88144 0.67 0.719424
Target:  5'- -cCGAGC-CGCUggagcgGCUGCUgaCGCAGCu -3'
miRNA:   3'- caGCUCGaGCGGa-----CGGCGA--GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 88403 0.7 0.55691
Target:  5'- cGUCGAGCUCaUCUGCaacCGCgagaaggCGCGGCa -3'
miRNA:   3'- -CAGCUCGAGcGGACG---GCGa------GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 89854 0.66 0.782777
Target:  5'- uGUCG-GC-CGCCagcGCCGCgUCGC-GCGa -3'
miRNA:   3'- -CAGCuCGaGCGGa--CGGCG-AGCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 90426 0.66 0.765162
Target:  5'- -cCGGGCUCGUC-GCCGC-CGaaaAGCu -3'
miRNA:   3'- caGCUCGAGCGGaCGGCGaGCg--UCGc -5'
13979 5' -61.4 NC_003521.1 + 95242 0.66 0.791408
Target:  5'- -aCG-GC-CGCCgcgucgUGCCGC-CGCAGCa -3'
miRNA:   3'- caGCuCGaGCGG------ACGGCGaGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 95768 0.68 0.651848
Target:  5'- -cCGAGC-CGCCcagacggucaucgUGCCGCUCGgccacgcgacCAGCGc -3'
miRNA:   3'- caGCUCGaGCGG-------------ACGGCGAGC----------GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 96970 0.66 0.765162
Target:  5'- --aGGGCUCGCUgagGCUGUagUCGCagagGGCGg -3'
miRNA:   3'- cagCUCGAGCGGa--CGGCG--AGCG----UCGC- -5'
13979 5' -61.4 NC_003521.1 + 97627 0.68 0.672024
Target:  5'- cGUCGuGCUCagGCUcGaCGUUCGCGGCGg -3'
miRNA:   3'- -CAGCuCGAG--CGGaCgGCGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 100262 0.76 0.265563
Target:  5'- -aCGAGCugUCGCCgccGCCGC-CGCAGCa -3'
miRNA:   3'- caGCUCG--AGCGGa--CGGCGaGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 100888 0.68 0.662428
Target:  5'- -aCGAGCUgGCCUuccgGCCGUgccccgaggaGCAGCGc -3'
miRNA:   3'- caGCUCGAgCGGA----CGGCGag--------CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 101366 0.69 0.574947
Target:  5'- gGUCGAGUUC-CgCUGCCGCuacaccuUCGCGcGCGa -3'
miRNA:   3'- -CAGCUCGAGcG-GACGGCG-------AGCGU-CGC- -5'
13979 5' -61.4 NC_003521.1 + 101382 0.66 0.774026
Target:  5'- -gCGAGC-CGUCgcGCCGCUUGaCGGCc -3'
miRNA:   3'- caGCUCGaGCGGa-CGGCGAGC-GUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.