miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 74 0.66 0.782777
Target:  5'- gGUUGcGCgugUCGCUUGCCGCgggcgUGCAGgGa -3'
miRNA:   3'- -CAGCuCG---AGCGGACGGCGa----GCGUCgC- -5'
13979 5' -61.4 NC_003521.1 + 1446 0.71 0.46544
Target:  5'- -gCGAGCUgCGCC-GCCGgUgGCAGCa -3'
miRNA:   3'- caGCUCGA-GCGGaCGGCgAgCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 2072 0.66 0.791408
Target:  5'- uGUCGAGCUcCGCCggcccgacuucUGCUGCUggaacugcugcCGguGCu -3'
miRNA:   3'- -CAGCUCGA-GCGG-----------ACGGCGA-----------GCguCGc -5'
13979 5' -61.4 NC_003521.1 + 2306 0.66 0.791408
Target:  5'- -aCGAGCUCucgcaCCUGCUGCgCGcCGGCc -3'
miRNA:   3'- caGCUCGAGc----GGACGGCGaGC-GUCGc -5'
13979 5' -61.4 NC_003521.1 + 6375 0.66 0.782777
Target:  5'- gGUCGGGgUCGCggaggggcGCCGCagcuacCGCGGCGg -3'
miRNA:   3'- -CAGCUCgAGCGga------CGGCGa-----GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 8335 0.67 0.728735
Target:  5'- cGUUGAGCUUgacgaaGCUgggGUagCGCUCGCAGCc -3'
miRNA:   3'- -CAGCUCGAG------CGGa--CG--GCGAGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 12165 0.68 0.662428
Target:  5'- -gCGGGUg-GCUUGUCGCuaUCGCGGCGa -3'
miRNA:   3'- caGCUCGagCGGACGGCG--AGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 16567 0.66 0.765162
Target:  5'- --aGGGCgcgCGCCUGCauuucaccaUGUUCGaCAGCGg -3'
miRNA:   3'- cagCUCGa--GCGGACG---------GCGAGC-GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 18713 0.71 0.46544
Target:  5'- aUCcGGCUgUGgCUGCCGCUgGCGGCGg -3'
miRNA:   3'- cAGcUCGA-GCgGACGGCGAgCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 25088 0.7 0.528781
Target:  5'- cGUCGGGCUC-CUUGCUGC-CGCuuAGCa -3'
miRNA:   3'- -CAGCUCGAGcGGACGGCGaGCG--UCGc -5'
13979 5' -61.4 NC_003521.1 + 27253 0.66 0.782777
Target:  5'- -aCGGGCUCGCCgaugaugcgGCCcacgaaggccagGCgggucUCGCAGCa -3'
miRNA:   3'- caGCUCGAGCGGa--------CGG------------CG-----AGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 33097 0.67 0.710046
Target:  5'- -aCGGGCUCcaGCCaGCCGaugacggCGUAGCGg -3'
miRNA:   3'- caGCUCGAG--CGGaCGGCga-----GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 36788 0.68 0.662428
Target:  5'- --aGGGCcacgCGCUgcggaGCCGCUCGCGGaCGg -3'
miRNA:   3'- cagCUCGa---GCGGa----CGGCGAGCGUC-GC- -5'
13979 5' -61.4 NC_003521.1 + 38915 0.66 0.791408
Target:  5'- uUCGGaugccGC-CGCCUGCUGUUCGgucauCGGCGg -3'
miRNA:   3'- cAGCU-----CGaGCGGACGGCGAGC-----GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 40311 0.66 0.791408
Target:  5'- cGUUGAGC-C-CCUugGCCaGCUCGguGCGc -3'
miRNA:   3'- -CAGCUCGaGcGGA--CGG-CGAGCguCGC- -5'
13979 5' -61.4 NC_003521.1 + 40396 0.66 0.782777
Target:  5'- gGUUGcGCgugUCGCUUGCCGCgggcgUGCAGgGa -3'
miRNA:   3'- -CAGCuCG---AGCGGACGGCGa----GCGUCgC- -5'
13979 5' -61.4 NC_003521.1 + 43277 0.66 0.747128
Target:  5'- --gGAGCUCGCC-GCCGCUCuCGuccGCc -3'
miRNA:   3'- cagCUCGAGCGGaCGGCGAGcGU---CGc -5'
13979 5' -61.4 NC_003521.1 + 43539 0.66 0.754388
Target:  5'- cGUCGAGC-CGCCcucccgcuccccGCCGCcggCGCcGCGu -3'
miRNA:   3'- -CAGCUCGaGCGGa-----------CGGCGa--GCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 45044 0.68 0.633538
Target:  5'- gGUCGAGa--GCCgcGCCGCUCGUgccaGGCa -3'
miRNA:   3'- -CAGCUCgagCGGa-CGGCGAGCG----UCGc -5'
13979 5' -61.4 NC_003521.1 + 52362 0.66 0.765162
Target:  5'- cUCGuAGCUCGgaggcgcgucauCCUGaCCGCcgUCGCGGCc -3'
miRNA:   3'- cAGC-UCGAGC------------GGAC-GGCG--AGCGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.