miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 114928 0.69 0.614262
Target:  5'- cUCGAGCggcUGCUggagaGCUGCUCGCgcAGCGg -3'
miRNA:   3'- cAGCUCGa--GCGGa----CGGCGAGCG--UCGC- -5'
13979 5' -61.4 NC_003521.1 + 69849 0.7 0.519519
Target:  5'- gGUCGAuGacgCGCCgaugagGCCGCcgCGCAGCGc -3'
miRNA:   3'- -CAGCU-Cga-GCGGa-----CGGCGa-GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 226617 0.7 0.547481
Target:  5'- cGUCagGGGCUCGCCgcaGCacaccagcuUGCUCGCGGCc -3'
miRNA:   3'- -CAG--CUCGAGCGGa--CG---------GCGAGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 167580 0.7 0.55691
Target:  5'- cGUCGucacGC-CGCUgcuguUGCCGCUCGUGGUGg -3'
miRNA:   3'- -CAGCu---CGaGCGG-----ACGGCGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 166456 0.7 0.566384
Target:  5'- -gCGAGCcgUCGCCgcacugGCCGUagccgCGCAGCa -3'
miRNA:   3'- caGCUCG--AGCGGa-----CGGCGa----GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 135334 0.69 0.574947
Target:  5'- gGUCGGGCgggUUGCCUcccucccgcgcgcGCCGuCUCcGCGGCGg -3'
miRNA:   3'- -CAGCUCG---AGCGGA-------------CGGC-GAG-CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 211058 0.69 0.5759
Target:  5'- -cUGAcCUCGUUcGUCGCUCGCGGCGa -3'
miRNA:   3'- caGCUcGAGCGGaCGGCGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 181883 0.69 0.595033
Target:  5'- -gCGAGCUCGCCgaUGaCGUUCGUGGUa -3'
miRNA:   3'- caGCUCGAGCGG--ACgGCGAGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 155435 0.69 0.604638
Target:  5'- -gCGAGCUgGCCgacCCGCugggcgagUCGCAGCa -3'
miRNA:   3'- caGCUCGAgCGGac-GGCG--------AGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 112962 0.71 0.510322
Target:  5'- -cCGAGaugCGCUacuacaUGCCGCUCaGCGGCGg -3'
miRNA:   3'- caGCUCga-GCGG------ACGGCGAG-CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 224316 0.71 0.492138
Target:  5'- -cCGAGCcgagCGCCgcaGCCcguGCUCGUAGCGu -3'
miRNA:   3'- caGCUCGa---GCGGa--CGG---CGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 56138 0.71 0.492138
Target:  5'- cGUCGGGCgagugCgGCUcgUGCUGCUCGCuGCGc -3'
miRNA:   3'- -CAGCUCGa----G-CGG--ACGGCGAGCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 142279 0.73 0.359478
Target:  5'- cUCGGGCUgggaccCGCC-GCCGCU-GCAGCGg -3'
miRNA:   3'- cAGCUCGA------GCGGaCGGCGAgCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 79641 0.73 0.390252
Target:  5'- cUCG-GCgUCGUCUGCUGCU-GCAGCGg -3'
miRNA:   3'- cAGCuCG-AGCGGACGGCGAgCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 137146 0.72 0.406271
Target:  5'- cUCGGaCUCGCCcgccaugGCCGCggcCGCAGCGg -3'
miRNA:   3'- cAGCUcGAGCGGa------CGGCGa--GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 70352 0.72 0.431058
Target:  5'- cGUUGAGCUUGUCggcgggguagaGCCGCagGCGGCGg -3'
miRNA:   3'- -CAGCUCGAGCGGa----------CGGCGagCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 53497 0.72 0.439515
Target:  5'- cGUCGAgGC-CGCugCUGCgGCgUCGCAGCGg -3'
miRNA:   3'- -CAGCU-CGaGCG--GACGgCG-AGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 18713 0.71 0.46544
Target:  5'- aUCcGGCUgUGgCUGCCGCUgGCGGCGg -3'
miRNA:   3'- cAGcUCGA-GCgGACGGCGAgCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 201673 0.71 0.46544
Target:  5'- -gCGAGCUgCGCC-GCCGgUgGCAGCa -3'
miRNA:   3'- caGCUCGA-GCGGaCGGCgAgCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 129618 0.71 0.492138
Target:  5'- aGUCGAG-UCGCCgGCCGC-C-CGGCGg -3'
miRNA:   3'- -CAGCUCgAGCGGaCGGCGaGcGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.