miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 43539 0.66 0.754388
Target:  5'- cGUCGAGC-CGCCcucccgcuccccGCCGCcggCGCcGCGu -3'
miRNA:   3'- -CAGCUCGaGCGGa-----------CGGCGa--GCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 124467 0.66 0.747128
Target:  5'- -aCGcGUUCGCC-GCCGCgcUCGCGGUc -3'
miRNA:   3'- caGCuCGAGCGGaCGGCG--AGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 126980 0.66 0.747128
Target:  5'- cGUCGccGGC-CGCCccgcUGCCGCUgcccgaCGUGGCGg -3'
miRNA:   3'- -CAGC--UCGaGCGG----ACGGCGA------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 129415 0.66 0.747128
Target:  5'- cUCGGGgUCGUC-GCCGUaguagaugCGCAGCGc -3'
miRNA:   3'- cAGCUCgAGCGGaCGGCGa-------GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 138031 0.66 0.791408
Target:  5'- -cCGAGCUggcggcCGCCggcGCCGUcaucgCGCAGCc -3'
miRNA:   3'- caGCUCGA------GCGGa--CGGCGa----GCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 144283 0.66 0.756193
Target:  5'- -gCGAGCacggcgacUCGCugCUGCCGCacgCGCuGCGg -3'
miRNA:   3'- caGCUCG--------AGCG--GACGGCGa--GCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 211703 0.66 0.765162
Target:  5'- --aGGGCcuccaGCUUGCCGC-CGUGGCGg -3'
miRNA:   3'- cagCUCGag---CGGACGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 52362 0.66 0.765162
Target:  5'- cUCGuAGCUCGgaggcgcgucauCCUGaCCGCcgUCGCGGCc -3'
miRNA:   3'- cAGC-UCGAGC------------GGAC-GGCG--AGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 137302 0.66 0.774026
Target:  5'- -gCGGGUggCGCg-GCUGCUgCGCGGCGa -3'
miRNA:   3'- caGCUCGa-GCGgaCGGCGA-GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 38915 0.66 0.791408
Target:  5'- uUCGGaugccGC-CGCCUGCUGUUCGgucauCGGCGg -3'
miRNA:   3'- cAGCU-----CGaGCGGACGGCGAGC-----GUCGC- -5'
13979 5' -61.4 NC_003521.1 + 104682 0.66 0.791408
Target:  5'- --gGAGCUCGaggggGCCGUggGCGGCGu -3'
miRNA:   3'- cagCUCGAGCgga--CGGCGagCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 6375 0.66 0.782777
Target:  5'- gGUCGGGgUCGCggaggggcGCCGCagcuacCGCGGCGg -3'
miRNA:   3'- -CAGCUCgAGCGga------CGGCGa-----GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 142341 0.66 0.782777
Target:  5'- -gCGAgGC-CGCCgccacgGCCGC-CGCGGCc -3'
miRNA:   3'- caGCU-CGaGCGGa-----CGGCGaGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 204019 0.66 0.774026
Target:  5'- -cCGAGUcCGCCguccgcgaGCgGCUCcGCAGCGc -3'
miRNA:   3'- caGCUCGaGCGGa-------CGgCGAG-CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 153500 0.66 0.774026
Target:  5'- -gCGcAGCUgCGCCUccaGgCGCUCGCuGCGc -3'
miRNA:   3'- caGC-UCGA-GCGGA---CgGCGAGCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 74 0.66 0.782777
Target:  5'- gGUUGcGCgugUCGCUUGCCGCgggcgUGCAGgGa -3'
miRNA:   3'- -CAGCuCG---AGCGGACGGCGa----GCGUCgC- -5'
13979 5' -61.4 NC_003521.1 + 27253 0.66 0.782777
Target:  5'- -aCGGGCUCGCCgaugaugcgGCCcacgaaggccagGCgggucUCGCAGCa -3'
miRNA:   3'- caGCUCGAGCGGa--------CGG------------CG-----AGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 240623 0.66 0.782777
Target:  5'- gGUUGcGCgugUCGCUUGCCGCgggcgUGCAGgGa -3'
miRNA:   3'- -CAGCuCG---AGCGGACGGCGa----GCGUCgC- -5'
13979 5' -61.4 NC_003521.1 + 109988 0.66 0.791408
Target:  5'- --aGGGCg-GCCUGCCGgUC-CAGCa -3'
miRNA:   3'- cagCUCGagCGGACGGCgAGcGUCGc -5'
13979 5' -61.4 NC_003521.1 + 163135 0.66 0.782777
Target:  5'- cUCGGGCaUCuGUCUGCC-CUCGUcccugAGCGg -3'
miRNA:   3'- cAGCUCG-AG-CGGACGGcGAGCG-----UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.