miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13979 5' -61.4 NC_003521.1 + 205171 1.07 0.00196
Target:  5'- aGUCGAGCUCGCCUGCCGCUCGCAGCGc -3'
miRNA:   3'- -CAGCUCGAGCGGACGGCGAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 185580 0.8 0.137716
Target:  5'- -gCGGGCUCGCCggcgaGCCGCUCGgGGCu -3'
miRNA:   3'- caGCUCGAGCGGa----CGGCGAGCgUCGc -5'
13979 5' -61.4 NC_003521.1 + 166635 0.8 0.144564
Target:  5'- cGUCGGGCcgcgCGCCgggcGCCGCggCGCAGCGg -3'
miRNA:   3'- -CAGCUCGa---GCGGa---CGGCGa-GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 100262 0.76 0.265563
Target:  5'- -aCGAGCugUCGCCgccGCCGC-CGCAGCa -3'
miRNA:   3'- caGCUCG--AGCGGa--CGGCGaGCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 58955 0.74 0.34474
Target:  5'- -gCGAGCUCGCCgagggGUCGUgCGUGGCGa -3'
miRNA:   3'- caGCUCGAGCGGa----CGGCGaGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 142279 0.73 0.359478
Target:  5'- cUCGGGCUgggaccCGCC-GCCGCU-GCAGCGg -3'
miRNA:   3'- cAGCUCGA------GCGGaCGGCGAgCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 181385 0.73 0.390252
Target:  5'- cUCGAGCUCG-CUGCCGgCg-GCGGCGc -3'
miRNA:   3'- cAGCUCGAGCgGACGGC-GagCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 172312 0.73 0.390252
Target:  5'- uGUCG-GUggCGCCagGCCGgUCGCGGCGg -3'
miRNA:   3'- -CAGCuCGa-GCGGa-CGGCgAGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 79641 0.73 0.390252
Target:  5'- cUCG-GCgUCGUCUGCUGCU-GCAGCGg -3'
miRNA:   3'- cAGCuCG-AGCGGACGGCGAgCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 137146 0.72 0.406271
Target:  5'- cUCGGaCUCGCCcgccaugGCCGCggcCGCAGCGg -3'
miRNA:   3'- cAGCUcGAGCGGa------CGGCGa--GCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 197870 0.72 0.431058
Target:  5'- gGUCGcGCUCGCUggGCUGCagGCGGCa -3'
miRNA:   3'- -CAGCuCGAGCGGa-CGGCGagCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 70352 0.72 0.431058
Target:  5'- cGUUGAGCUUGUCggcgggguagaGCCGCagGCGGCGg -3'
miRNA:   3'- -CAGCUCGAGCGGa----------CGGCGagCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 53497 0.72 0.439515
Target:  5'- cGUCGAgGC-CGCugCUGCgGCgUCGCAGCGg -3'
miRNA:   3'- -CAGCU-CGaGCG--GACGgCG-AGCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 201673 0.71 0.46544
Target:  5'- -gCGAGCUgCGCC-GCCGgUgGCAGCa -3'
miRNA:   3'- caGCUCGA-GCGGaCGGCgAgCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 18713 0.71 0.46544
Target:  5'- aUCcGGCUgUGgCUGCCGCUgGCGGCGg -3'
miRNA:   3'- cAGcUCGA-GCgGACGGCGAgCGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 1446 0.71 0.46544
Target:  5'- -gCGAGCUgCGCC-GCCGgUgGCAGCa -3'
miRNA:   3'- caGCUCGA-GCGGaCGGCgAgCGUCGc -5'
13979 5' -61.4 NC_003521.1 + 104139 0.71 0.483158
Target:  5'- cUCGGGCcCGcCCUGCUcgguGCUCuGCGGCGg -3'
miRNA:   3'- cAGCUCGaGC-GGACGG----CGAG-CGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 56138 0.71 0.492138
Target:  5'- cGUCGGGCgagugCgGCUcgUGCUGCUCGCuGCGc -3'
miRNA:   3'- -CAGCUCGa----G-CGG--ACGGCGAGCGuCGC- -5'
13979 5' -61.4 NC_003521.1 + 129618 0.71 0.492138
Target:  5'- aGUCGAG-UCGCCgGCCGC-C-CGGCGg -3'
miRNA:   3'- -CAGCUCgAGCGGaCGGCGaGcGUCGC- -5'
13979 5' -61.4 NC_003521.1 + 224316 0.71 0.492138
Target:  5'- -cCGAGCcgagCGCCgcaGCCcguGCUCGUAGCGu -3'
miRNA:   3'- caGCUCGa---GCGGa--CGG---CGAGCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.