miRNA display CGI


Results 61 - 80 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13980 3' -64.3 NC_003521.1 + 223925 0.67 0.620149
Target:  5'- gAUUGGagGCGCGGCcgagGGGGucgaGGcGGCCg -3'
miRNA:   3'- -UAACCggCGCGCCG----CCCUg---CCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 68047 0.67 0.620149
Target:  5'- -gUGGUC-CGCGGCGccccCGGUGGCa -3'
miRNA:   3'- uaACCGGcGCGCCGCccu-GCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 211271 0.67 0.610738
Target:  5'- --gGGgUGUGuCGGUGGGugGGUcGcGCCu -3'
miRNA:   3'- uaaCCgGCGC-GCCGCCCugCCA-C-CGG- -5'
13980 3' -64.3 NC_003521.1 + 84758 0.67 0.610738
Target:  5'- --cGGgCGCgGCGGCGGcGACGuuguUGGCa -3'
miRNA:   3'- uaaCCgGCG-CGCCGCC-CUGCc---ACCGg -5'
13980 3' -64.3 NC_003521.1 + 139752 0.67 0.610738
Target:  5'- --aGGCCGCGUgccgacGGCaGGAuccggccguCGGcGGCCg -3'
miRNA:   3'- uaaCCGGCGCG------CCGcCCU---------GCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 49970 0.67 0.610738
Target:  5'- --aGGaCGaGCGGCGGGugGGUcgagggagccgGGUCg -3'
miRNA:   3'- uaaCCgGCgCGCCGCCCugCCA-----------CCGG- -5'
13980 3' -64.3 NC_003521.1 + 155400 0.67 0.610738
Target:  5'- --aGGCCG-GCGGgGGGcugggcacCGGaGGCCu -3'
miRNA:   3'- uaaCCGGCgCGCCgCCCu-------GCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 125024 0.67 0.609797
Target:  5'- --aGGCUGCGCauccGCGGGuauccgcGCGuGUGGUCc -3'
miRNA:   3'- uaaCCGGCGCGc---CGCCC-------UGC-CACCGG- -5'
13980 3' -64.3 NC_003521.1 + 176134 0.67 0.606977
Target:  5'- cGUUGGCCGCGCgcaGGUucuccaucuccucGGAgccCGGUGGCa -3'
miRNA:   3'- -UAACCGGCGCG---CCGc------------CCU---GCCACCGg -5'
13980 3' -64.3 NC_003521.1 + 130020 0.67 0.605097
Target:  5'- --cGGCCGC-UGGCuuucagcgucauggaGGGGCacGUGGCCa -3'
miRNA:   3'- uaaCCGGCGcGCCG---------------CCCUGc-CACCGG- -5'
13980 3' -64.3 NC_003521.1 + 19732 0.67 0.60134
Target:  5'- -cUGaCCaGCGUGGCGGuGACGGcgucgGGCUu -3'
miRNA:   3'- uaACcGG-CGCGCCGCC-CUGCCa----CCGG- -5'
13980 3' -64.3 NC_003521.1 + 196994 0.67 0.60134
Target:  5'- --gGGCC-CGCGGCcGG-CGGcGGCUg -3'
miRNA:   3'- uaaCCGGcGCGCCGcCCuGCCaCCGG- -5'
13980 3' -64.3 NC_003521.1 + 186925 0.67 0.60134
Target:  5'- --gGcGCCG-GUGGCgGGGGCGGcGGCg -3'
miRNA:   3'- uaaC-CGGCgCGCCG-CCCUGCCaCCGg -5'
13980 3' -64.3 NC_003521.1 + 98536 0.67 0.60134
Target:  5'- --gGGCCGCuGCaGCGGcGGCGGgucccaGCCc -3'
miRNA:   3'- uaaCCGGCG-CGcCGCC-CUGCCac----CGG- -5'
13980 3' -64.3 NC_003521.1 + 196771 0.67 0.591961
Target:  5'- --cGGCCgGCGCGaccGCGGGcGCGGUaaacgGGaCCg -3'
miRNA:   3'- uaaCCGG-CGCGC---CGCCC-UGCCA-----CC-GG- -5'
13980 3' -64.3 NC_003521.1 + 116404 0.67 0.591961
Target:  5'- cGUUGGuuGgguaGCGGCGGcGAUGGcacGCCg -3'
miRNA:   3'- -UAACCggCg---CGCCGCC-CUGCCac-CGG- -5'
13980 3' -64.3 NC_003521.1 + 72531 0.67 0.591961
Target:  5'- --cGaGCUGCggagGCGGCGGcGACGGUGucGUCg -3'
miRNA:   3'- uaaC-CGGCG----CGCCGCC-CUGCCAC--CGG- -5'
13980 3' -64.3 NC_003521.1 + 46443 0.67 0.591961
Target:  5'- --cGGCgGgGCuGCGGGGgcUGGUcGGCCu -3'
miRNA:   3'- uaaCCGgCgCGcCGCCCU--GCCA-CCGG- -5'
13980 3' -64.3 NC_003521.1 + 237169 0.67 0.591961
Target:  5'- --cGGCCGCcgaggcagaCGGCGGcGGCcGUGGCa -3'
miRNA:   3'- uaaCCGGCGc--------GCCGCC-CUGcCACCGg -5'
13980 3' -64.3 NC_003521.1 + 44062 0.67 0.591025
Target:  5'- --cGGUCGCGcCGGcCGGGgcagcagACGGUGcaggcGCCg -3'
miRNA:   3'- uaaCCGGCGC-GCC-GCCC-------UGCCAC-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.